Query= MSMg01no382_i08.b1 MSMg01no382_i08.b1 CHROMAT_FILE:
MSMg01no382_i08.b1 PHD_FILE: MSMg01no382_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:17 2005
(594 letters)
>mm_chr19_20142991_20143983
Length = 993
Score = 1048 bits (542), Expect = 0.0
Identities = 578/590 (97%), Gaps = 1/590 (0%)
Strand = Plus / Plus
Query: 5 ggaattccagttatggtcacttgacatgcatactatatacataagcatgttcctataatt 64
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 ggaattccagttatggttatttgacatgcatactatatacataagtgtgttcctataatt 264
Query: 65 tatgcataattatgaatagttattgataacttgtagtagaaatataaataatatttatct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgcataattatgaatagttattgataacttgtagtagaaatataaataatatttatct 324
Query: 125 ctgtcctaccatttgtctagatcatgaatcattattgtgccagctgatttcatttatcat 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 ctgtcctaccatttgtctagatcatgaatcattattgtgccagttgatttcatttatcat 384
Query: 185 ctgactaaagtatagtaaattgtatatgctttgttcaatttgtgttttatttttatttaa 244
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ctgactaaagtatactaaattgtatatgctt-gttcaatttgtgttttatttttatttaa 443
Query: 245 gatgttacaatctaaatttttgttttccatgttgaattatactgtattgctgtaaaatac 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatgttacaatctaaatttttcttttccatgttgaattatactgtattgctgtaaaatac 503
Query: 305 ttccttaatgtgctaacaactcctgaaaaaaaaaaacatttcattgttttgaaatcagtt 364
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 504 ttccttaatgtgctaacaactcctgaaaaaaaaaaccatttcattgttttggaatcagtt 563
Query: 365 gcagagcttcattaatggtatgttgtaggcaagtgaacagaattcatgaataagaagttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcagagcttcattaatggtatgttgtaggcaagtgaacagaattcatgaataagaagttc 623
Query: 425 agatggtctagaatcatggaatttcttatgatttttaaggacttgccacaggtaacacat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatggtctagaatcatggaatttcttatgatttttaaggacttgccacaggtaacacat 683
Query: 485 aacaagaggatgctttcatgtaaatgtagattaaaactacaaatgagacgtctgcatgga 544
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 aacaagaggatgttttcatgtaaatgtagattaaaactacaaatgagacatctgcatgga 743
Query: 545 tcacattcttagtggtatctaaattgcagtttggggtgaccataacccag 594
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcacattcttagtggtatctaaattgcagtttggggtgaccataacccag 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_i08.g1 MSMg01no382_i08.g1 CHROMAT_FILE:
MSMg01no382_i08.g1 PHD_FILE: MSMg01no382_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:17 2005
(561 letters)
>mm_chr19_20377691_20378651
Length = 961
Score = 793 bits (410), Expect = 0.0
Identities = 446/458 (97%)
Strand = Plus / Minus
Query: 104 tcattaaaaataaaaaataaaaataaaactgactctgaaccacagaagtcattaaatact 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tcattaaaaataaaaaataaaaataaaactgactctgaaccacagaagtcattaaatact 902
Query: 164 aacattttctcaaataaaggtatgacctcacacatgctttttctgtctatgctggaatct 223
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 901 aacattttctcagataaaggtatgacctcacacatgcttttcctgtctatgctggaatct 842
Query: 224 tgactggcttgatcttataaaggtcttgtgtcaatagccacagctgttgtgagttcatga 283
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 841 tgactggcttgatcttataaaggtcttgtgtcaataaccacagctgttgtgagtacatga 782
Query: 284 gcgtaatgactctgtcatgtaatatgattgttaatagctatcaaccaacaaaaggtttca 343
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 781 gcgtaatgactctgtcatgtaatatgatttttaatagctatcaaccaacaaaaggtttca 722
Query: 344 attagctagccatctttggctatattttattgagctacactgagaaagacctagagctta 403
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 721 attagctagccatctttggctatattttattgagctacactaagaaagacctagagctta 662
Query: 404 tataagtaaactgcttatgaatatctagtatttattaaataatggaaattgttgatataa 463
|||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct: 661 tataagtaaactacttatgaatatctagtaatcattaaataatgggaattgttgatataa 602
Query: 464 tgaagaacaaatggtccccctgaagtttttgcactaccagtatttgaagtaatttggtta 523
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgaagaacaaatggtccccctgaggtttttgcactaccagtatttgaagtaatttggtta 542
Query: 524 tgatattaaatctgagtcatcaatttgattgaagtgaa 561
||||||||||||||||| ||||||||||||||||||||
Sbjct: 541 tgatattaaatctgagttatcaatttgattgaagtgaa 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
