BAC Information

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BAC

Clone NameMSMg01-382J07
Chromosome19 (Build37)
Map Location 14,934,757 - 15,102,301
singlet/doubletdoublet
Overlap geneEG433225
Upstream geneOlfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
Downstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382J07.T7 (MSMg01no382_j07.b1)MSMg01-382J07.TJ (MSMg01no382_j07.g1)
ACCAG486451AG486452
length803761
length of high quality
(start - end)		212 (22 - 233)555 (58 - 612)
definitionCHROMAT_FILE: MSMg01no382_j07.b1 PHD_FILE: MSMg01no382_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:22 2005CHROMAT_FILE: MSMg01no382_j07.g1 PHD_FILE: MSMg01no382_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,102,101 - 15,102,301)(14,934,757 - 14,935,311)
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCTAGTGCTCATG
TTCTTTCTAGGTTTTATTCACTCTAGGAGCCCAGGCCCTAGAATCATGCC
GACCACATTTAGGGGTCGATATTCCCACTTCAATAAACTCAATCTAGAAA
CTCCCAGGGATTTCTCTCCAATGAGTCTAGATCCAGTTGGGTTGACTATC
AGTATAGACCAGCACACTATATTTCACCAGCAGCCAGGTTCCATACCATA
TACTGATGGTAGGCCTACCCTTGTGCTTGGNGTAAATTTGGTAGGTTTAT
AGTAAAGCCTTTCCTCTGGTTAAGGAGACAGGGGAAGACGNNNNNTGAAT
ATAAAGGNNNNNNGGGGGGAGAATGGAGCCCCCNNNTCNNNNNNNNNNNN
NNNNNNNNNGGGGGGAGAGGAGGGGTGCGTGGCGNNNNNNNNNNNNGNNN
NNNCCTNNNNNNNNNGGGGGGTGGGGGGGCGNNNNNNNNNNNTTATTTTA
ATGTGNNNNNNGANNNNNNNNTTNNNNTNNNNNAGNGTGNNNNNCCCCNN
NNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGAAAAAACTANNNNNNNNNN
NNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNAGNNNNNNNNNNN
NNNNNNNNNNNNTNNNNNNNNTNNNNNNNNNNNNNNANNNNNNNNNNNNN
AGNNNNNNNNNNNNTNNNNNTNNNNNNNANNNTANNNNNANNNNNNNTNN
NNNNNANNANNNANAAANAAAAAGNNNTTTTTTAAGTTGGGTTGGGGGGA
GGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATAAGAAAATTAGAGAGAAGCCAGTTGGAACCAGTCAGTTTA
AAGAGGAGTTTGAGTTGAGTTGAACTTGCCCATCAGAGTTCAGAAACAAC
TAGGAAGGATGAGCTCATTCAGCAGTAAGCCTTTGAAATGACAATTATAT
CTGGTGAGTAAAAGTTACTTTTACAGCATAGGTTTTTTAATATGATACAT
TTCAGCCACAGGCCATGTAGCAAAGTTTACCTATGCCATTCCTGGTATTT
ACCTAAGAAAATTGCCGGCTGAAGAGATATTACAGTGGTTAAAAGACATT
TCTACACTCACAGAAGATTTGAGTTTGGTACCCTGTGCCCACATGGGGCA
GCTCAGCATATCTTTCAACTCTAAGGAAGCTTGTGCCTCTGGTCTATCCA
CACACTGTACATAATTAAAATTAAATATCTTAAAAGAAAATTGTCCATAT
AGATAGCAGCATGCTCATTTATATAAACTAGTTTGTGAAATCTAAATTCA
AAAATATGAAAAGAGAAAAAAATGTGAAGTCTCCCAATCAGCAGTAAATA
TAACAGACATTTAAATATATCTTACAGATATCCAAGGAAGTCTTATTCTG
TGTTTGTAAGAAAATACATACGGATGTCAGCTAGATAAGTCCCCAAAAGA
TAGGTGCTTTCTTTCTCTTGGGGGAGAGGTGGGAAAAAAGGAAATAAAGG
GGGATGGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_j07.b1 MSMg01no382_j07.b1 CHROMAT_FILE:
MSMg01no382_j07.b1 PHD_FILE: MSMg01no382_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:22 2005
         (212 letters)



>mm_chr19_15101971_15102582
          Length = 612

 Score =  335 bits (173), Expect = 2e-96
 Identities = 194/201 (96%)
 Strand = Plus / Minus

                                                                       
Query: 12  ggaattctagtgctcatgttctttctaggttttattcactctaggagcccaggccctaga 71
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggaattctagtgctcaagttctttctaggttttattcactctaggagcccaggccctaga 272

                                                                       
Query: 72  atcatgccgaccacatttaggggtcgatattcccacttcaataaactcaatctagaaact 131
           |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 271 atcatgccaaccacatttaggggtagatagtcccacttcaataaactcaatctagaaact 212

                                                                       
Query: 132 cccagggatttctctccaatgagtctagatccagttgggttgactatcagtatagaccag 191
           ||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||
Sbjct: 211 cccagggatttctctccaatgagactagatccagtccggttgactatcagtatagaccag 152

                                
Query: 192 cacactatatttcaccagcag 212
           |||||||||||||||||||||
Sbjct: 151 cacactatatttcaccagcag 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no382_j07.g1 MSMg01no382_j07.g1 CHROMAT_FILE:
MSMg01no382_j07.g1 PHD_FILE: MSMg01no382_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:22 2005
         (555 letters)



>mm_chr19_14934557_14935511
          Length = 955

 Score = 1058 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataagaaaattagagagaagccagttggaaccagtcagtttaaagaggagtttgagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataagaaaattagagagaagccagttggaaccagtcagtttaaagaggagtttgagttg 260

                                                                       
Query: 61  agttgaacttgcccatcagagttcagaaacaactaggaaggatgagctcattcagcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgaacttgcccatcagagttcagaaacaactaggaaggatgagctcattcagcagta 320

                                                                       
Query: 121 agcctttgaaatgacaattatatctggtgagtaaaagttacttttacagcataggttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctttgaaatgacaattatatctggtgagtaaaagttacttttacagcataggttttt 380

                                                                       
Query: 181 taatatgatacatttcagccacaggccatgtagcaaagtttacctatgccattcctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatgatacatttcagccacaggccatgtagcaaagtttacctatgccattcctggta 440

                                                                       
Query: 241 tttacctaagaaaattgccggctgaagagatattacagtggttaaaagacatttctacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttacctaagaaaattgccggctgaagagatattacagtggttaaaagacatttctacac 500

                                                                       
Query: 301 tcacagaagatttgagtttggtaccctgtgcccacatggggcagctcagcatatctttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacagaagatttgagtttggtaccctgtgcccacatggggcagctcagcatatctttca 560

                                                                       
Query: 361 actctaaggaagcttgtgcctctggtctatccacacactgtacataattaaaattaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actctaaggaagcttgtgcctctggtctatccacacactgtacataattaaaattaaata 620

                                                                       
Query: 421 tcttaaaagaaaattgtccatatagatagcagcatgctcatttatataaactagtttgtg 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 621 tcttaaaagaaaattgtccatatagatagtagcatgctcatttatataaactagtttatg 680

                                                                       
Query: 481 aaatctaaattcaaaaatatgaaaagagaaaaaaatgtgaagtctcccaatcagcagtaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatctaaattcaaaaatatgaaaagagaaaaaaatgtgaagtctcccaatcagcagtaa 740

                          
Query: 541 atataacagacattt 555
           |||||||||||||||
Sbjct: 741 atataacagacattt 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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