Query= MSMg01no383_j07.b1 MSMg01no383_j07.b1 CHROMAT_FILE:
MSMg01no383_j07.b1 PHD_FILE: MSMg01no383_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:39 2005
(460 letters)
>mm_chr19_19581335_19582198
Length = 864
Score = 862 bits (446), Expect = 0.0
Identities = 457/462 (98%), Gaps = 4/462 (0%)
Strand = Plus / Minus
Query: 3 ggaattcttgcttttgttccttatcttacaataatatgcagagatctttggctgacataa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggaattcttgcttttgttccttatcttacaataatatgcagagatctttggctgacataa 605
Query: 63 ttgtaatcatgtcattccataattaaaatagtctataatttttcaggatatgtcttgggt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttgtaatcatgtcattccataattaaaatagtctataatttttcaggatatgtcttgggt 545
Query: 123 aacagtctttttaacttggcacacagtgttatttgatcctagccttaattcttttttcat 182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aacagtctttttatcttggcacacagtgttatttgatcctagccttaattcttttttcat 485
Query: 183 gtttgtataatctacatcagtagctgtgatcttgctccttctgtattgggcctgtactct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtttgtataatctacatcagtagctgtgatcttgctccttctgtattgggcctgtactct 425
Query: 243 actgcctccattaactttggattccttcaattgtagttctccaagaaatgcttagatcag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 actgcctccattaactttggattccttcaattgtagttctccaagaaatgcttagatcag 365
Query: 303 tcatgcagatttctcctcactcaatgctgaagataacccaattgctttagcaacaaccat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcatgcagatttctcctcactcaatgctgaagataacccaattgctttagcaacaaccat 305
Query: 363 ttcctaccatgaaattctcaacctctctct-t---tctctctctgacttctagcctataa 418
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 304 ttcctaccatgaaattctcaacctctctctctctctctctctctgacttctagcctataa 245
Query: 419 ctatataaaatgagtttcatctctctttacttcctggattta 460
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctatataaaatgagtttcatctctctttacttcctggattta 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 864
Length adjustment: 10
Effective length of query: 450
Effective length of database: 854
Effective search space: 384300
Effective search space used: 384300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_j07.g1 MSMg01no383_j07.g1 CHROMAT_FILE:
MSMg01no383_j07.g1 PHD_FILE: MSMg01no383_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:39 2005
(483 letters)
>mm_chr19_19400558_19401442
Length = 885
Score = 911 bits (471), Expect = 0.0
Identities = 481/485 (99%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 1 aaataaccagaaattggcaaatcattctaacgctgttgtatgtgtctcagggaagaactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataaccagaaattggcaaatcattctaacgctgttgtatgtgtctcagggaagaactc 260
Query: 61 ttcccacaagtaggttgtggtccttcggagttgccccagattgcacaccttaggaacagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccacaagtaggttgtggtccttcggagttgccccagattgcacaccttaggaacagt 320
Query: 121 catcatatgggagacttttcactgcagaataacatccccagttctttgcactcaccctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcatatgggagacttttcactgcagaataacatccccagttctttgcactcaccctca 380
Query: 181 atattgtctgtgataaaaatccatgaatttcatgagattcttttctatgacaggccacta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattgtctgtgataaaaatccatgaatttcatgagattcttttctatgacaggccacta 440
Query: 241 atcactcttgatcttgtgataaatttaaatactgactaatccaccctgaatagggattag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcactcttgatcttgtgataaatttaaatactgactaatccaccctgaatagggattag 500
Query: 301 gcatcaatgtaggatgaaagtcttcattagaattaattgcatctttaaagcatagtttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatcaatgtaggatgaaagtcttcattagaattaattgcatctttaaagcatagtttta 560
Query: 361 gaataac--gatatacatatgaatcattggcacaatgtatctaaagaaagcacattttta 418
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaataactggatatacatatgaatcattggcacaatgtatctaaagaaagcacattttta 620
Query: 419 ttaatattcatatctattatttgaattttatataaatctattatcagattaaaaaattac 478
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ttaatattcatatctattatttgaattttatataaatctattgtcagattaaaaaattac 680
Query: 479 accaa 483
|||||
Sbjct: 681 accaa 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 885
Length adjustment: 10
Effective length of query: 473
Effective length of database: 875
Effective search space: 413875
Effective search space used: 413875
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
