Query= MSMg01no386_l04.b1 MSMg01no386_l04.b1 CHROMAT_FILE:
MSMg01no386_l04.b1 PHD_FILE: MSMg01no386_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:33 2005
(688 letters)
>mm_chr19_16874577_16875662
Length = 1086
Score = 1237 bits (640), Expect = 0.0
Identities = 673/685 (98%), Gaps = 2/685 (0%)
Strand = Plus / Plus
Query: 4 ggaattctggggtattaccagccctgtacaacaaagttaagtgtctttaaaggtccctta 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggggtagtatcagccctgtacaacaaagttaagtgtctttaaaggtccctta 263
Query: 64 ggaggagttagggagagcctattagtgtgtggcctgtgcgtcatgacagtgctatgaaaa 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 ggaggagttagggagagcctattagtgtgtggcctgtgcttcatgacagtgctatgaaaa 323
Query: 124 caaggtggctacaaaacttaggccatgtgacagggaccactctttctctggtttagtgag 183
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaggtg--tacaaaacttaggccatgtgacagggaccactctttctctggtttagtgag 381
Query: 184 tgcggcctaaacgtgtgaccaagattatgtgacaggggtcacctgtcttgcgtataatca 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgcggcctaaacatgtgaccaagattatgtgacaggggtcacctgtcttgcgtataatca 441
Query: 244 tctggcaattcagggcctagttatccggagagcttgtttctcagaaggtcgggcttccct 303
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 tctggcagttcagggcctagttatccagagagcttgtttctcagaaggtcgggcttccct 501
Query: 304 gcctgtaaataatgacatctacacattacgtcattcttcatttagctgcgtagtattccg 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 gcctgtaaataatgacatctacacattacgtcattcttcatttagctgcgtaatattcca 561
Query: 364 tgttcacacaacccacattttcttcatatactcagttcctagagagataagactcctgag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgttcacacaacccacattttcttcatatactcagttcctagagagataagactcctgag 621
Query: 424 agaaacgcacacagtagagacttggctttatgaagtttcagagggaacaaagactccatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agaaacgcacacagtagagacttggctttatgaagtttcagagggaacaaagactccatt 681
Query: 484 agcaactgggctaggggtcctttctgtgatgttttggcaaagaagctggctttattctgc 543
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 682 agcaactgggctaggggtcctttctgtggtgttttggcaaagaagctggctttattctgc 741
Query: 544 ctatgccctgngaattttcataagtcacacatataagcaataaactaacttttctcatag 603
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctatgccctgggaattttcataagtcacacatataagcaataaactaacttttctcatag 801
Query: 604 actcagttatttatttctacttcatggatctcaggaattaaactcagattgtcaggctag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 actcagttatttatttctacttcatggatctcaggaattaaactcagattgtcaggctag 861
Query: 664 gaagcaagagactctacttgctaag 688
|||||||||||||||||||||||||
Sbjct: 862 gaagcaagagactctacttgctaag 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1086
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1076
Effective search space: 729528
Effective search space used: 729528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_l04.g1 MSMg01no386_l04.g1 CHROMAT_FILE:
MSMg01no386_l04.g1 PHD_FILE: MSMg01no386_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:34 2005
(663 letters)
>mm_chr19_17040139_17041201
Length = 1063
Score = 1160 bits (600), Expect = 0.0
Identities = 650/672 (96%), Gaps = 9/672 (1%)
Strand = Plus / Minus
Query: 1 aataagaaccagctaagatgctgcccttttcgctataggcctctagccaccaacaaggaa 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 aataagagccagctaagacgctgcccttttcgctataggcctctagccaccaacaaggaa 990
Query: 61 aggccagcaaggtttctctggtagccaaggagagagagaagatgtttcttcaattggggt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 989 aggccagcaaggtttctctggtagccaaggagagatagaagatgtttcttcaattggggt 930
Query: 121 aggaagccaatccaatctaccttactacaagccaggcgagattaaaattcagaaaat--- 177
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 929 aggaagccaatccaatctaccttactacaagccaggcaagattgaaattcagaaaataga 870
Query: 178 ------agagactgagggtggcattggctaggaaagggcttaatcaggccctgagctgga 231
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 869 gagttgagagactgagggtggcattggctaggaaagggcttaatcgggccctgagctgga 810
Query: 232 cctccagcacagaagacaaaactcagtagacaatgatgttcagacagtgacccctagcct 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cctccagcacagaagacaaaactcagtagacaatgatgttcagacagtgacccctagcct 750
Query: 292 ctgaagagaagggcccagggaactgctatcctgggagcagccaggtgtgtgtattgtcct 351
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 749 ctgaagagaagggcccagggaactgctatcctgggagcagccaggtgtgtgtgttgtcct 690
Query: 352 cttggatatacccataggctatcagcagctggactgaattgaccatctgcctttctgcat 411
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cttggatatgcccataggctatcagcagctggactgaattgaccatctgcctttctgcat 630
Query: 412 tcttagagccaggtgctggcctggccagatgaccatgtctgtgaaaacatgcctgaagaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcttagagccaggtgctggcctggccagatgaccatgtctgtgaaaacatgcctgaagaa 570
Query: 472 ggcagagaatgtatggtttggactggtttctgtttctgccctttatgggggaaaagacag 531
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 569 ggcagagaatgtatggtttggacgggtttctgtttctgccctttatgggggaaaaggcag 510
Query: 532 gaagtccaacatgaacatttctctatatgtaaaagtcattcattaatttatataagaaat 591
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 509 gaagtccaacatgaacatttctctatatgcaaaagtcattcattaatttatataagaaat 450
Query: 592 gttttcacaggaaaaatctgggctttattaaatgaataggcttccttttaaagaaggtgg 651
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gttttcacagggaaaatctgggctttattaaatgaataggcttccttttaaagaaggtgg 390
Query: 652 gtccttataagt 663
|| |||||||||
Sbjct: 389 gttcttataagt 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
