Query= MSMg01no386_o24.b1 MSMg01no386_o24.b1 CHROMAT_FILE:
MSMg01no386_o24.b1 PHD_FILE: MSMg01no386_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:51 2005
(138 letters)
>mm_chr19_11839377_11839916
Length = 540
Score = 230 bits (119), Expect = 2e-65
Identities = 129/133 (96%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 5 gaattcttgagcg--attaatgatgtaatactgagcttgtgcatgcatttgtgatctgct 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaattcttgagcgaaaagaatgatgtaatactgagcttgtgcatgcatttgtgatctgct 278
Query: 63 aggacagttacatttgaattgacttttttttgtattccagctagtatgtatttgttattg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aggacagttacatttgaattgacttttttttgtattccagctagtatgtatttgttattg 218
Query: 123 ttatactgttata 135
|||||||||||||
Sbjct: 217 ttatactgttata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 540
Length adjustment: 8
Effective length of query: 130
Effective length of database: 532
Effective search space: 69160
Effective search space used: 69160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_o24.g1 MSMg01no386_o24.g1 CHROMAT_FILE:
MSMg01no386_o24.g1 PHD_FILE: MSMg01no386_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:51 2005
(633 letters)
>mm_chr19_11674006_11675039
Length = 1034
Score = 965 bits (499), Expect = 0.0
Identities = 511/515 (99%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 120 aaaaactgaccagtgattttagacacatgtagatgcatagatgttctcctttcccatgtg 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaaactgaccggtgattttagacacatgtagatgcatagatgttctcctttcccatgtg 379
Query: 180 atacgtagaaagttttcagaaaagatagatttgagcttgaatctatacccttaaaattaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atacgtagaaagttttcagaaaagatagatttgagcttgaatctatacccttaaaattaa 439
Query: 240 tgagcaccttaaaagttagcaattagtgttttcttacgggaaaaaaattttggaagtctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgagcaccttaaaagttagcaattagtgttttcttacgggaaaaaaattttggaagtctg 499
Query: 300 atctttgaataaaaatacaagataa-tagtttagaatgaaaagtaccaagaaattgctgt 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 atctttgaataaaaatacaagataagtagtttagaatgaaaagtaccaagaaattgctgt 559
Query: 359 tttggatttgtacctccattaataaaggaatatcatttacttggtggcatacattaaacc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttggatttgtacctccattaataaaggaatatcatttacttggtggcatacattaaacc 619
Query: 419 acatttaaatatctgagcaaatcccatgctgagtaatgtttttcatgtgctgtcacactc 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acatttaaatatctgagaaaatcccatgctgagtaatgtttttcatgtgctgtcacactc 679
Query: 479 agtgtgctagtattttgatgaagaattttgaaattacattcttgagaatttcacctttag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtgtgctagtattttgatgaagaattttgaaattacattcttgagaatttcacctttag 739
Query: 539 tttccttttcttgtaatacctttgtttgccttttatgcaagaataagactagctcgaaaa 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740 tttccttttcttgtaatacctttgtttgccttttgtgcaagaataagactagctcgaaaa 799
Query: 599 tggcttctgaagcgtatccttcaaatttttttaag 633
|||||||||||||||||||||||||||||||||||
Sbjct: 800 tggcttctgaagcgtatccttcaaatttttttaag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space: 637952
Effective search space used: 637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
