BAC Information

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BAC

Clone NameMSMg01-387L09
Chromosome19 (Build37)
Map Location 42,888,171 - 42,888,492
singlet/doubletsinglet
Overlap geneLOC545291
Upstream geneFrat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387L09.T7 (MSMg01no387_l09.b1)MSMg01-387L09.TJ (MSMg01no387_l09.g1)
ACCAG490380AG490381
length785767
length of high quality
(start - end)
322 (72 - 393)408 (81 - 488)
definitionCHROMAT_FILE: MSMg01no387_l09.b1 PHD_FILE: MSMg01no387_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:51 2005CHROMAT_FILE: MSMg01no387_l09.g1 PHD_FILE: MSMg01no387_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAATTTTACCCGGGTCTTACATGGGTGGGTTATAAACACTGAG
TTCATAAACCATCAGTTAATATTAAGAGTTTACACAGCCAACCTCCGCCT
TGGACCCTGCAACCACCTCGATGTTGATGCCTAAGAATTGGATTGCCATC
TATGAACTCCTTTTTAAGGAAGGCGTGCTGGTCACCCAAAAAGATCCACA
TGCCCACCCCAAGCTGGCTGGCAGGAATGTAATGAAGCTGGAGATTATGT
TGTATTAAACTTTAAAGAAAAAAAAGTTGACACAATACAAATCTCAGTTA
TGAGTTGTATCAAAGGCAAACACAAGCTGTGGTAACAGCAAATACACAAA
ATTAAGATGGTGGTAGGCAGACTTTTGTAAGCCTACACACACGCTGGCTA
CCGAGTATATATCCATCAACCAGTTACCACTCCCTCTGGGAACCTTCCCT
TTACTACCCCCACATCTGTCTACCCCCCTGAAACTAAACCTTCGGGCACG
CTCTCATCCCGCTTCGTTTCCCCGGCTCTGCCCCCCTGTTCCCCCCCCCC
TACTCATCATTCCCCCTCCCCCTCCCCCTGCTTCTCCTCTCTCCCCCGCT
CCTCTTTTCCCTTCCTTTTTCCCCTCCCCCTCCTTCTTCTCCCCTTCTTC
CCTCCTCCCCCCTCCCTCCCTTTCTCCCCTCCCTTTTTTTTCCCCCTTTC
TTCCCGCATCCTTTTCCTTACCCTCCCCCCCTCTT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGATATTGCACTGAATT
TAGAGATCCATTTTAGGAGAGACAACATTTCAGGAAAAAAAAAAACGTGC
CTTCTGATGCAGAGTTCTCCATTTGTTTTGGTCTTTCCTGATTTCTTTAA
TCAGTGGTTTGTAGTTTTTAGCATAAATAATCAACATGCCATAAAGTTTC
ATTAGACATATATTTAAACACTGACATATTTTGGTATTATTATAAGTAGG
ATGTAAATGTTCTTTTTAAATTCTGATTAGTCATTGCTTGTATACAAAAC
ATAATCAATTTTTTACATATCAACCTTGTGTCCTGTGAAACTGCTTAGCT
CCTAGTAATATTAGATTTTCTGTGTCAGCTATTGTCTGTGAATCGTTGAG
TTTCTTTCTCTTTTAACTATTTTTTTTTATTTATGAGCATGGGTATTTTG
CCTGTGTGTATGCCTGTGCATTGTGGGCATGCAGNAACTGCGGGTGGACT
TGGATTTCCCAAAACTGAATTCAAGATGTATCTGAACTGGTTGGGAACTG
AAACCAAGTCTCCGGTAGAAGTTAACCCTGTAACGCGGTCTTTTACCCCA
TCCCCAGATTTTGATAATTGTACTTATTTCTTCTTATTTTTCCCGCTGTC
TGACGCTAACCGTCTTTCCCTCCTCTCCCCTATAATTCCTACGTTACATT
CTTTTATTCCATCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_l09.b1 MSMg01no387_l09.b1 CHROMAT_FILE:
MSMg01no387_l09.b1 PHD_FILE: MSMg01no387_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:51 2005
         (322 letters)



>mm_chr19_42887971_42888692
          Length = 722

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttacatgggtgggttataaacactgagttcataaaccatcagttaatattaagagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcttacatgggtgggttataaacactgagttcataaaccatcagttaatattaagagttt 463

                                                                       
Query: 61  acacagccaacctccgccttggaccctgcaaccacctcgatgttgatgcctaagaattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acacagccaacctccgccttggaccctgcaaccacctcgatgttgatgcctaagaattgg 403

                                                                       
Query: 121 attgccatctatgaactcctttttaaggaaggcgtgctggtcacccaaaaagatccacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attgccatctatgaactcctttttaaggaaggcgtgctggtcacccaaaaagatccacat 343

                                                                       
Query: 181 gcccaccccaagctggctggcaggaatgtaatgaagctggagattatgttgtattaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gcccaccccaagctggctggcaggaatgtaatgaagctggagattatgttgtattaaact 283

                                                                       
Query: 241 ttaaagaaaaaaaagttgacacaatacaaatctcagttatgagttgtatcaaaggcaaac 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 282 ttaaagaaaaaaaagttgacacaatacaaatctcagttataagttgtatcaaaggcaaac 223

                                 
Query: 301 acaagctgtggtaacagcaaat 322
           ||||||||||||||||||||||
Sbjct: 222 acaagctgtggtaacagcaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)