BAC Information

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BAC

Clone NameMSMg01-388I07
Chromosome19 (Build37)
Map Location 41,225,401 - 41,225,635
singlet/doubletsinglet
Overlap geneTll2
Upstream geneCyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10
Downstream geneTm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388I07.T7 (MSMg01no388_i07.b1)MSMg01-388I07.TJ (MSMg01no388_i07.g1)
ACCAG490995AG490996
length884750
length of high quality
(start - end)
---239 (78 - 316)
definitionCHROMAT_FILE: MSMg01no388_i07.b1 PHD_FILE: MSMg01no388_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:52 2005CHROMAT_FILE: MSMg01no388_i07.g1 PHD_FILE: MSMg01no388_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTCCTAAAAATCCGCGGAATTCTTACAAA
ATTCATATACAAAATGTACTTAAAAAGACATATCCAGTCCTCCCCACCCC
GTGTGTGTGTGTGCCTGTGTGTGTGTGTGTGTGTGTGTGTATGTATCCAC
CCTACACAGCCAGCGAACTCATCTTAAATTTCAAATACCACCACCACAAT
CACCACCCCCCCCCCCCCCCACCCCCCCCCCCACCCCCAAACCCCTTCAC
CCCCCCCCCACCACCACACCCCCTACCCCCCCCCCCCCCCCCCCCCCCCC
ACACCCTCTCTTTCTCCACCAACCCACCCACAAACATAAAACCCATCTTC
CCCACCCCCCCACCCCACACAAAACACCCCTCCCCACACCTACTTCTTAT
TTTCCCCCCCCCCCCCCACCCCCAACCCCCCCCCCAACCCCACACCCACA
CCTCACCCCACCCCCACCACACCACCCCCACCCCCCACAAAACCCCCACC
CACCACCCCACACCAAACCCCCTCTCCCCCACCCCCACCACATACACACG
CTCCCACCCCCATCACCCCCACAAACCCCACCCACCACAACAATACCACA
AACCCCCCCCTACCTCCCAACACCCCACTACCCCCACTCACCAAAACTCT
CCCCCCCACCACCAAACCCCACCCCAACACCACAACACCCCACCCCCCCC
CACAACCCCCCACCACCCACACAACACCCACCCTCCCCCTCCTCCACACA
CAACTACCCCCCCAAAACCACACCAACACAACCCCACACCAACCACCCAC
ACCCACAACCAACCACCCAACCAAAACGCACTCACACCCAAACAAACACC
TCCCCCCCCACACAACATACACACCTACCCAACN
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAATTTGTTGACGTCTGACTT
TTCCTTCATTGATTAACTTCCTGTGTTTCTGGTGTTTTAGGACTCTTTCT
AGCCTAGCCATTTTTTTTTTTTAAATTTAGAATTTTCTGGGAATCTAATA
CATGAGTACTAGATTCACACGGTCTCTGTTCCTCCCTTATTCCTTCCAAG
TCCTAGTGTCCTGGATTCCCTTCCACATTTGCTAATCCTAGAATTACTGT
TGTCCTACACATATACGTTTTTACTTTACTGAGTCCATCTAGTGTTGGCC
ATGTATAAACAGGTTTGGAGACTTCTTCTAGGAGCACTGTGTATTGTGGA
TCCCGGCTATGGACCCGCTTTGTATTTTTCTCAGGACTCTTGGGATTCTA
TGGGTCTTGGGTGAGCTTTTCACATCAGTTTCTGAACTGGAAGGCTGGAG
AGTCACATCTGCATGACGGACAGACTTTGTGACTGAAACTCTTGCAGAAG
TTATTCATGCTCCTGTCTGAGCCTGGGACAGACAAGCAAGGCTGTATTCT
ACTCTCTGAGCCCTTTGAGGACGTCTGTTTTATGCGGGAGTTTACTGACC
ACTTCCTGGTTCCCGGGGCATGAAAGGCACATCTCCCATGGCTACCTTGG
CATTCCCTTGGGGGTACCTCTGCCCGTTCTGAACCCAAACCCCAACCTGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_i07.g1 MSMg01no388_i07.g1 CHROMAT_FILE:
MSMg01no388_i07.g1 PHD_FILE: MSMg01no388_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:52 2005
         (239 letters)



>mm_chr19_41225201_41225835
          Length = 635

 Score =  420 bits (217), Expect = e-122
 Identities = 232/239 (97%), Gaps = 4/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaatttgttgacgtctgacttttccttcattgattaacttcctgtgtttctggtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaatttgttgacgtctgacttttccttcattgattaacttcctgtgtttctggtgttt 260

                                                                       
Query: 61  taggactctttctagcctagccattttttttttttaaatttagaattttctgggaatcta 120
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 261 taggactctttctagcctagccattttttttt----aatttagaattttctgggaatcta 316

                                                                       
Query: 121 atacatgagtactagattcacacggtctctgttcctcccttattccttccaagtcctagt 180
           |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 317 atacgtgagtactagattcacacggtctctgctcctcccttattccctccaagtcctagt 376

                                                                      
Query: 181 gtcctggattcccttccacatttgctaatcctagaattactgttgtcctacacatatac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtcctggattcccttccacatttgctaatcctagaattactgttgtcctacacatatac 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 635
Length adjustment: 9
Effective length of query: 230
Effective length of database: 626
Effective search space:   143980
Effective search space used:   143980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)