BAC Information

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BAC

Clone NameMSMg01-388J24
Chromosome19 (Build37)
Map Location 19,065,331 - 19,213,056
singlet/doubletdoublet
Overlap geneRorb
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388J24.T7 (MSMg01no388_j24.b1)MSMg01-388J24.TJ (MSMg01no388_j24.g1)
ACCAG491075AG491076
length783747
length of high quality
(start - end)		501 (38 - 538)550 (66 - 615)
definitionCHROMAT_FILE: MSMg01no388_j24.b1 PHD_FILE: MSMg01no388_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005CHROMAT_FILE: MSMg01no388_j24.g1 PHD_FILE: MSMg01no388_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,212,560 - 19,213,056)(19,065,331 - 19,065,880)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
CAATTCTAACGCTAGTATCATTTAAAACTCTGTAAAATAATAGAATATCA
AGTAAAAATGAAATACTTTAAAAAAAACACAATGCTTTTTATTTATTACC
TTCTACAACTATGAAATAGAATCTGAATTAAGCCAGTCAACTTTTTGGTT
ATTTACAATAAAAGTATCAGTTGAAACTGAAGTCATATAGCCAACTGGAC
TAGGATGTCCAAGATGAGCATTCACTTGCTCGCCTTTTTATGCTAGTATA
CTCAGGTACATTGAGTCATTCCAGAGTTGGTGACTGAAGTGCCATCCTCC
TAATACATCAAGCCTCCCATGCATCCTTGACTCAGTATGGTAGTGCTTCC
AAAAATAGATCCAACTTTGCATGTTGTACAACAGCATGATGTCACCATCT
ATAATCAAAGCAACAATAACAATGTAGAGAGAGAAGGATGCAGAACAAAC
GGATGAACTACCATAGTTGCTATTTTAATTATGCTGTTAAATACTGTAAA
ATAAACATTAGCCCCCATACAGAATCTATTACTGATGCTATGGTGTGCTT
ACAGACCGGNAACCTACCATGCCTGCCCTCCAGAAGCCCCACCAGCCNAA
AACGAAACCAAAGGCCAAAACCTTTCCCCCCCCCATGGGATGATATTGGG
GACCCCCGCGGGTGAAATATTGAACACCCGGAAAAAATTAAGGAGGGGCA
CCCCCCCAGAAAAACCACAGTCCCCCACAACCG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACGGGAGGGAATTGGGGGGTATAAATATGACTGAA
CTGCTTTCAGGATATTGTGGTGGGGAAAGAGGAAGTTTGCAGTTATTCCC
ATTTGTCCCTCTGTGTTGCACTCCTTAATCTATTAATACTTAGGGACACA
GATAAGAGAAAGCCTTTGAACTTACATTTTCACTTAAAAATACCGTATTC
ATCAACAAACTTCACAAAGCTGTGAGCCTAAGATGGCTATTTCCTGAAGG
ACATCATCATTACTTCATCATAATGGACACCACTGCCCCTGTTAACTGAT
TTTTGTCTAATGATTTAGGGAAGAAAGAACATGTCAAAATATTTGATAAA
TTATTATATCTTTATTAAAGGTATTTTTAAAATAATTCAACGAATCACCA
TAACTTATTTGTACTATGGACTTCAGTTTAGCAGTAAGATTTCTAACAGT
GGGTGTTTATAGGTACTGTAAACTGACTAAAATCATCCCAGGTAGCCATT
GAATAGATTTTGGCTCATATGATATTAAGTCAGAGGCTCTCTTTGCATAA
ATTACACTCCAGGGAGTAGCTTACACGTGGGAGAATCTGCTTCAATACAT
TCTTAATTATTAAATGATCTAACTTTTNAGGAAATGAAAATAGAGGTAAT
TTGCTCCCTGAGGGGTAGGAAGATGTTTTTGAAAGACACAAGGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_j24.b1 MSMg01no388_j24.b1 CHROMAT_FILE:
MSMg01no388_j24.b1 PHD_FILE: MSMg01no388_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:00 2005
         (501 letters)



>mm_chr19_19212356_19213256
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 495/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcaattctaacgctagtatcatttaaaactctgtaaaataatagaatatcaa 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaattcactcaattctaatgctagtatcatttaaaactctgtaaaataatagaatatcaa 642

                                                                       
Query: 65  gtaaaaatgaaatactttaaaaaaaacacaatgctttttatttattaccttctacaacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 641 gtaaaaatgaaatactttaaaaaaaacacaatgctttttatttattaccttctacaactg 582

                                                                       
Query: 125 tgaaatagaatctgaattaagccagtcaactttttggttatttacaataaaagtatcagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgaaatagaatctgaattaagccagtcaactttttggttatttacaataaaagtatcagt 522

                                                                       
Query: 185 tgaaactgaagtcatatagccaactggactaggatgtccaagatgagcattcacttgctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgaaactgaagtcatatagccaactggactaggatgtccaagatgagcattcacttgctc 462

                                                                       
Query: 245 gcctttttatgctagtatactcaggtacattgagtcattccagagttggtgactgaagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcctttttatgctagtatactcaggtacattgagtcattccagagttggtgactgaagtg 402

                                                                       
Query: 305 ccatcctcctaatacatcaagcctcccatgcatccttgactcagtatggtagtgcttcca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccatcctcctaatacatcaagcctcccatgcatccttgactcagtatggtagtgcttcca 342

                                                                       
Query: 365 aaaatagatccaactttgcatgttgtacaacagcatgatgtcaccatctataatcaaagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaaatagatccaactttgcatgttgtacaacagcatgatgtcaccatctataatcaaagc 282

                                                                       
Query: 425 aacaataacaatgtagagagagaaggatgcagaacaaacggatgaactaccatagttgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aacaataacaatgtagagagagaaggatgcagaacaaacggatgaactaccatagttgct 222

                            
Query: 485 attttaattatgctgtt 501
           |||||||||||||||||
Sbjct: 221 attttaattatgctgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_j24.g1 MSMg01no388_j24.g1 CHROMAT_FILE:
MSMg01no388_j24.g1 PHD_FILE: MSMg01no388_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:00 2005
         (550 letters)



>mm_chr19_19065131_19066080
          Length = 950

 Score = 1048 bits (542), Expect = 0.0
 Identities = 548/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgggagggaattggggggtataaatatgactgaactgctttcaggatattgtggtgggg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgggagggaattggggggtgtaaatatgactgaactgctttcaggatattgtggtgggg 260

                                                                       
Query: 61  aaagaggaagtttgcagttattcccatttgtccctctgtgttgcactccttaatctatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaggaagtttgcagttattcccatttgtccctctgtgttgcactccttaatctatta 320

                                                                       
Query: 121 atacttagggacacagataagagaaagcctttgaacttacattttcacttaaaaataccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacttagggacacagataagagaaagcctttgaacttacattttcacttaaaaataccg 380

                                                                       
Query: 181 tattcatcaacaaacttcacaaagctgtgagcctaagatggctatttcctgaaggacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcatcaacaaacttcacaaagctgtgagcctaagatggctatttcctgaaggacatc 440

                                                                       
Query: 241 atcattacttcatcataatggacaccactgcccctgttaactgatttttgtctaatgatt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcattacatcatcataatggacaccactgcccctgttaactgatttttgtctaatgatt 500

                                                                       
Query: 301 tagggaagaaagaacatgtcaaaatatttgataaattattatatctttattaaaggtatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagggaagaaagaacatgtcaaaatatttgataaattattatatctttattaaaggtatt 560

                                                                       
Query: 361 tttaaaataattcaacgaatcaccataacttatttgtactatggacttcagtttagcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaataattcaacgaatcaccataacttatttgtactatggacttcagtttagcagt 620

                                                                       
Query: 421 aagatttctaacagtgggtgtttataggtactgtaaactgactaaaatcatcccaggtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagatttctaacagtgggtgtttataggtactgtaaactgactaaaatcatcccaggtag 680

                                                                       
Query: 481 ccattgaatagattttggctcatatgatattaagtcagaggctctctttgcataaattac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccattgaatagattttggctcatatgatattaagtcagaggctctctttgcataaattac 740

                     
Query: 541 actccaggga 550
           ||||||||||
Sbjct: 741 actccaggga 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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