BAC Information

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BAC

Clone NameMSMg01-389G09
Chromosome19 (Build37)
Map Location 23,010,561 - 23,010,830
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneEG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389G09.T7 (MSMg01no389_g09.b1)MSMg01-389G09.TJ (MSMg01no389_g09.g1)
ACCAG491663AG491664
length771746
length of high quality
(start - end)
205 (115 - 319)271 (330 - 600)
definitionCHROMAT_FILE: MSMg01no389_g09.b1 PHD_FILE: MSMg01no389_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:59 2005CHROMAT_FILE: MSMg01no389_g09.g1 PHD_FILE: MSMg01no389_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTTAAACTTGCGGGCGCTATACGAATCACTATTCCCACACCATCCC
GCGGAATCATTTGTCGCACTACACTCCTGGGCATATACCTCAGGAAATCC
ATACCCAACCACAGAGACACTTGTACACTCAGGTTTATTGTTGCCCTATT
CCTGAAAGCAATATCAGAAGCAGCTTAGATATCCATCAACACATGAATGG
ACAACTTTGTATTTAGTACATATATACAGTGAAACATTATTAATCTGAAA
ATAAAAATGACTTTTGCAGAAAATAGTTGACTCTGAGAAGTATTGGATTG
AATGTTCTGAACGATACTATTTTTTCTCTCTCATATTTGGATCCTAGTTT
GCAGTATATATATGTGATACCTCAATGAGAAAAAAAATGTTAGCAAAGCC
CACCTTACAAGGAGACCACAAGAACATTGAACAGTGCTAAGGATGGATAC
AGAGCCCAAGGACACCTGTGACATGGAGCAGCAAAGAACATTCCATTCCA
CCATTATTCCAGAAATACCACTATGCTACCCAATGCCTCACACATTCTTT
GACTTCTGCTACCGTCATACACCCCTGACCCACGCCTCGCTTGGTGAGGA
AAGCGCTTACTCTCACCTCCCCGCTTACCAACCCACCCCCGACGCCAACC
CCCGCCCTTTCCTCTTTGCTCCAACCCCCATTCCAATGTTCCTTTACTGC
CCCGATCCCTCCGCACTCCTTCCCTTCTCCCTTTTCATTCCGTCCTCCGT
GCCCCCCCCTCCCCCCTTTTG
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCGAAACTCAACTGACCATGGNAAGAAAGAA
ACCAATATATTTGCACGGCTGACTGGCTTATTCGGGACTTACTGTGTGGC
TGATCTGGCCTGCCTTCTGTTCTTGTAAATAAAGTTTTATTGACATATGG
TCATATCTACCTGTTTACTGATTGTCTAGGACCACTTTGCGGACACAGTG
GCAACTCTGTAAACTATGAGACCACATTGCCTTGAAACAATCAGATGTTG
ATCTAGTCATTTCTGAAAAAAATTATTTTTTCACATCTACCTACCTGACC
TGGTGTACACATTTCTTAAGACAGGACCACATCTGAATAGTTTTTGATTT
CCTCTTGGGCCTTGTGGGTACCAAGCAAGAATTTAAGAATGTGGAATGAA
AGATCCCAAGGTGGGATAGAGTGGCCCTTTGAGCTTCAAGTATGGCATCT
TGAAGAGACTCCTGGGAGTGTCAAGTCTTGTTTTATAGCTACCAAGCTCA
GCTATTANAGAAGGCACAATCATGTTTCTACCACCAATGATGCTATGGTT
TTTCTTTTCTTTTTGGNCCAGGTCTATTCTTTTCTCAGCCTCCCCAGCTG
CTGGGATTTTCTTTCTGTTACACCATGCCCAGCTCTAGATTGCCGAAATT
TGCCCTGCGATTGCCCTTTCAACCCCTTTGTAATCGACCCCCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_g09.g1 MSMg01no389_g09.g1 CHROMAT_FILE:
MSMg01no389_g09.g1 PHD_FILE: MSMg01no389_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:59 2005
         (271 letters)



>mm_chr19_23010360_23011030
          Length = 671

 Score =  516 bits (267), Expect = e-151
 Identities = 269/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcacatctacctacctgacctggtgtacacatttcttaagacaggaccacatctgaatag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcacatctacctacctgacctggtgtacacatttcttaagacaggaccacatctgaatag 412

                                                                       
Query: 62  tttttgatttcctcttgggccttgtgggtaccaagcaagaatttaagaatgtggaatgaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttttgatttcctcttgggccttgtgggtaccaagcaagaatttaagaatgtggaatgaa 352

                                                                       
Query: 122 agatcccaaggtgggatagagtggccctttgagcttcaagtatggcatcttgaagagact 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agatcccaaggtgggatagagtggccctttgagcttcaagtatggcatcttgaagagact 292

                                                                       
Query: 182 cctgggagtgtcaagtcttgttttatagctaccaagctcagctattanagaaggcacaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 291 cctgggagtgtcaagtcttgttttatagctaccaagctcagctattaaagaaggcacaat 232

                                         
Query: 242 catgtttctaccaccaatgatgctatggtt 271
           ||||||||||||||||||||||||||||||
Sbjct: 231 catgtttctaccaccaatgatgctatggtt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)