Query= MSMg01no390_j18.b1 MSMg01no390_j18.b1 CHROMAT_FILE:
MSMg01no390_j18.b1 PHD_FILE: MSMg01no390_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:35 2005
(245 letters)
>mm_chr19_10807398_10808041
Length = 644
Score = 420 bits (217), Expect = e-122
Identities = 235/241 (97%), Gaps = 1/241 (0%)
Strand = Plus / Minus
Query: 5 ggaggaaatggtgtaacactcccataccccatggtcttgcagcctccagggtctccaagc 64
|||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 444 ggaggaaatggt-taacactcccataccccatggtcctgcagcttccagggtctccaagc 386
Query: 65 agagtcctgggttgggagtttcagaaagtactgggcactggtgaaatgtggctccagagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagtcctgggttgggagtttcagaaagtactgggcactggtgaaatgtggctccagagg 326
Query: 125 aggtcagggagatgctgagcacagcctgtagggcccagggctaggagggagttcctgggt 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggacagggagatgctgagcacagcctgtagggcccagggctaggagggagttcctgggt 266
Query: 185 atctgtgagaagagacaaaatgaatgaaggtaggtggtggacaaagaaagcctgacagta 244
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 acctgtgagaagagacaaaatgaatgaaggtaggcggtggacaaagaaagcctgacagta 206
Query: 245 t 245
|
Sbjct: 205 t 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space: 149860
Effective search space used: 149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_j18.g1 MSMg01no390_j18.g1 CHROMAT_FILE:
MSMg01no390_j18.g1 PHD_FILE: MSMg01no390_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:35 2005
(474 letters)
>mm_chr19_10600821_10601693
Length = 873
Score = 862 bits (446), Expect = 0.0
Identities = 467/474 (98%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 1 cactccaagtgtttcagtctttttaaatagcttgactgtcctttttgagaagtctgtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cactccaagtgtttcagtctttttaaatagcttgactgtcctttttgagaagtctctggg 260
Query: 61 catccattcgtatggatggaaggaagaaaggttaaaaaccattgaataaactagtttaaa 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 catccattcgtatggatggaaggaagaaagg-taaaaaccattgaataaactagtttaaa 319
Query: 121 ggcaagtcaaggactcagtcatcctagtttgaatgtgtgttttaacatttaagtatcccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcaagtcaaggactcagtcatcctagtttgaatgtgtgttttaacatttaagtatcccg 379
Query: 181 taaaatagtaatctgtgaggttgagttcttcaatcttgaggtcaaagctcaacagaaagt 240
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 taagatagtaatctgtgaggttgagttcttcaatcttgaggtcaaaactcaacagaaagt 439
Query: 241 ttctatttaaaatttttatcttacctgggttctttttagtactgttattgttgagctagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttctatttaaaatttttatcttacctgggttctttttagtactgttattgttgagctagc 499
Query: 301 tggttcttgtcattggtgtgttcctgtgggtacacagaaggacctggaaagaatggacta 360
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 500 tggttcttgtcattggtgtgttccagtgggtacacagaaggacctggaaagaatgggcta 559
Query: 361 gaatgcctaggtggtagcctgactttgacaggcaacaaaagaggctcatatgtcccatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaatgcctaggtggtagcctgactttgacaggcaacaaaagaggctcatatgtcccatta 619
Query: 421 ttgtattttaaattttgtgtgtgtgcgtggtttgtaggtgcccaaagagcctag 474
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 ttgtattttaaattttgtgtgtgtgcctggtttgtaggtgcccaaagagcctag 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
