BAC Information

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BAC

Clone NameMSMg01-391H16
Chromosome19 (Build37)
Map Location 11,441,523 - 11,442,055
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7
Downstream geneMs4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391H16.T7 (MSMg01no391_h16.b1)MSMg01-391H16.TJ (MSMg01no391_h16.g1)
ACCAG493242AG493243
length765754
length of high quality
(start - end)
251 (58 - 308)539 (76 - 614)
definitionCHROMAT_FILE: MSMg01no391_h16.b1 PHD_FILE: MSMg01no391_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:43 2005CHROMAT_FILE: MSMg01no391_h16.g1 PHD_FILE: MSMg01no391_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTCGCAGAGCATCCGCGGAATTCACCTAA
ATTCTGAATATTTTGATGTATACTGAAACAGCAGGGGAGGAAGGACCTCA
GGTAAAACCTTTGAGGAGCCAGTGAGATGGTTCAGTGGGTAAGGACATAT
GTTGTCTAGTCTGATGACCAGTGTGTGATACTCAGACCCCATATGTTGGA
AAGAACTGAGTCTTTCAAATTGCCCTCTGATCTCCATGTATGTGTGCATG
TATGTATGCATGCATGCATGCACGAACTCATGCTCACGCGTGTGAGTGCG
CGCGCATTTTTACTCTGATACACACAGACACACAAACATACACATGTATA
CACATAATAAACATTTTAATAAATTTTGTTTGATTTCTGAATGAACTACA
AAGAAGTCTTTGGAAAGTATGACTACTTCAGCATCTCCTGGTATCCCCAT
GAGTACATTTGTTTGTAAAGACTGCTGCGACTGAGGTGACAGGGGCTGTC
TTGTATAAGTAAAACAGTTCTCTGTCCAGGCAATGCTAGTCACGAGAAAA
GGAATCAATGGAAATGAAGTCACTCCTAGAATATTAGTCCCATGCCTGAT
AACACTCTGTCACTGTTCCACCAACTAGATGGAGACCTACAACCCTATTA
AATCCAGTGGCCCAGATACCGGTTCCCAGGACTCAAATAGGCCCCTAAGG
GGCAACGCCCAAGTGAGGATGCCCCAATCCTGCCTTGGCAGGCCCAAAAA
AACCACCCCCCCGCG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCGCAAAATTCCAGAGCATTTAATATCAGCGGCAGAC
TCTGGAAATATATTCATGACAGAGGACTATGAAGAGTGGAGGATGCAGTC
CCAAATGCTTGCTACTAATTGCCACAGGAAACAAAAAGTCACAGAGCTGG
CATCTGGCAACTGACAACTCATACAGTTGAATCTTGTGTCAGTATAATAT
AAAAAAAGATTGTGGTATGAATACAAAATCTTTCCAAGTTAATGAAACTT
GGCAAAAGCTAGCTGAGTTGTTTATTTTACTGCTGTAAAAATTAGAAACA
TCAAAAAGAATAATACTTAAAATGGTTTGATTCCTGTTAAGTACTTTCAA
AAGTACTAAAGAACCATATAACTCTACCTGAAAAGTCTAGAAGGCAGTTA
TCCTCTGCACTTAAGTTTAGAAGAATCACGGTATCTGCTGGTACGTGTTA
TGATACTAATAAATAGTGGTACAGCAGCTGATGCAGTGATTTCTAAAGAG
ATAATTCTATGGCTCTGAACTTCTTTATCCTTACCTAGAGGAGGAGGGAA
AGCAAAATATAGAGTTGACATCTTAAAAAAAAAAAAAGACCTTCACCATG
TCCTTCATTTCTAGCTTCCTAAAAATGATGCTGCTATTCAAGAATGTTGT
TGGATCAGGCCTGCTGATTCCCATCCACGGTCCTTTATCCTTGACAACAG
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_h16.g1 MSMg01no391_h16.g1 CHROMAT_FILE:
MSMg01no391_h16.g1 PHD_FILE: MSMg01no391_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:43 2005
         (539 letters)



>mm_chr19_11441323_11442255
          Length = 933

 Score =  888 bits (459), Expect = 0.0
 Identities = 517/539 (95%), Gaps = 6/539 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcatttaatatcagcggcagactctggaaatatattcatgacagaggactatgaaga 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agagaatttaatatcagcggcagactctggaaatatattcatgacagaggactatgaaga 674

                                                                       
Query: 61  gtggaggatgcagtcccaaatgcttgctactaattgccacaggaaacaaaaagtcacaga 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 673 atggaggatgcagtcccaaatgcttgctactaattgccacaggaaacaaaaaggcacaga 614

                                                                       
Query: 121 gctggcatctggcaactgacaactcatacagttgaatcttgtgtcagtataatataaaaa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cctggcatctggcaactgacaactcatacagttgaatcttgtgtcagtataatataaaaa 554

                                                                       
Query: 181 aagattgtggtatgaatacaaaatctttccaagttaatgaaacttggcaaaagctagctg 240
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 553 aagattgtggtatgaatacaaaatctttccaagttaatgaaacttgacaaaaactagctg 494

                                                                       
Query: 241 agttgtttattttactgctgtaaaaattagaaacatcaaaaagaataatacttaaaatgg 300
           |||||   |||||||||||||||||||||||||||||||||||||||| ||||     ||
Sbjct: 493 agttgacaattttactgctgtaaaaattagaaacatcaaaaagaataagactt-----gg 439

                                                                       
Query: 301 tttgattcctgttaagtactttcaaaagtactaaagaaccatataactctacctgaaaag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 438 tttgattcctgttaagtactttcaaaagtactaaagaaccatataactctac-tgaaaac 380

                                                                       
Query: 361 tctagaaggcagttatcctctgcacttaagtttagaagaatcacggtatctgctggtacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctagaaggcagttatcctctgcacttaagtttagaagaatcacggtatctgctggtacg 320

                                                                       
Query: 421 tgttatgatactaataaatagtggtacagcagctgatgcagtgatttctaaagagataat 480
           ||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct: 319 tgttatgatactaataaatagtggtacggcaactgatgcaatgatttctaaagagataat 260

                                                                      
Query: 481 tctatggctctgaacttctttatccttacctagaggaggagggaaagcaaaatatagag 539
           |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 259 tctatggctctgaacttctttatccttatctagaggaggaggaaaagcaaaatatagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 933
Length adjustment: 10
Effective length of query: 529
Effective length of database: 923
Effective search space:   488267
Effective search space used:   488267
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)