Query= MSMg01no393_l24.b1 MSMg01no393_l24.b1 CHROMAT_FILE:
MSMg01no393_l24.b1 PHD_FILE: MSMg01no393_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:50 2005
(411 letters)
>mm_chr19_15526066_15526875
Length = 810
Score = 588 bits (304), Expect = e-172
Identities = 325/332 (97%), Gaps = 1/332 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggctgcttcaggctgccactcacctaccacttctgtgagtcagtctttctaca 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggctgcaccaggctgccactcacctaccacttctgtgagtcagtctttctaca 264
Query: 65 tctgctgctgaggaagagaggacaacataaaaggacccacagtatgatcaccccgtctac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgctgctgaggaagagaggacaacataaaaggacccacagtatgatcaccccgtctac 324
Query: 125 ctgcaggtcttatttgtttctcacagtcagtggggaaaataatttgggcatgaaaactat 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ctgcaggtcttatttgtttctcacagtcagtggagaaaataatttgggcatgaaaactat 384
Query: 185 aagaatttgaattgattaagaagttcttaaaaagagactcaggctaacagacttctgtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaatttgaattgattaagaagttcttaaaaagagactcaggctaacagacttctgtgg 444
Query: 245 acctgttttcaaatactcctatgctcctttagcatcctccaaaaaaaaaaattccagaga 304
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 445 acctgttttcaaatactcctatgctcctttagcatcctccaaaagaaaaa-ttccagagg 503
Query: 305 taaacacatacacacagacacacagacacaca 336
|||||||||||||||||||||||| |||||||
Sbjct: 504 taaacacatacacacagacacacacacacaca 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 810
Length adjustment: 9
Effective length of query: 402
Effective length of database: 801
Effective search space: 322002
Effective search space used: 322002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_l24.g1 MSMg01no393_l24.g1 CHROMAT_FILE:
MSMg01no393_l24.g1 PHD_FILE: MSMg01no393_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:50 2005
(388 letters)
>mm_chr19_15704400_15705187
Length = 788
Score = 681 bits (352), Expect = 0.0
Identities = 377/388 (97%), Gaps = 6/388 (1%)
Strand = Plus / Minus
Query: 1 taagacagatttggaaccatgatgtatcagatattttttcaaatggactgaacttcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 taagacagatttggaaccatgatgtatcagatattttttcaaatggactgaacttcattc 358
Query: 61 atattaaatggttagaggaaatttttgagtatcaaaaatagctttctgacctcggcacca 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atgttaaatggttagaggaaatttttgagtatcaaaaatagctttctgacctcggcacca 298
Query: 121 tatttcagttagtttcaatgatatattgagaacttaaggcagtttttagcctacaaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tatttcagttagtttcaatgatatattgagaacttaaggcagtttttagcctacaaagat 238
Query: 181 aatccatgtgttcactagatgaatcagtgtattaacaatcatcgtcgtcattgtcatcac 240
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 237 aatccatgtattcactagatgaatcagtgtattaacaatcatcgtcatcattgtcatcac 178
Query: 241 catcaccatcaccatcaccatcaccatcaccatcatctcatctgtatcaaattctcagac 300
||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct: 177 catcaccatcaccatcaccctca---tca---tcatctcatctgtatcaaattctcagac 124
Query: 301 ggagcaggacatttttgtgttgccagataactgtggggcagggcctagaaggaatgctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggagcaggacatttttgtgttgccagataactgtggggcagggcctagaaggaatgctaa 64
Query: 361 caaatactgtgttgattttatattcaca 388
||||||||||||||||||||||| ||||
Sbjct: 63 caaatactgtgttgattttatatccaca 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
