BAC Information

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BAC

Clone NameMSMg01-395O08
Chromosome19 (Build37)
Map Location 11,699,246 - 11,699,488
singlet/doubletsinglet
Overlap genenone
Upstream geneDdb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2
Downstream geneMs4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395O08.T7 (MSMg01no395_o08.b1)MSMg01-395O08.TJ (MSMg01no395_o08.g1)
ACCAG496602AG496603
length782769
length of high quality
(start - end)
168 (85 - 252)236 (79 - 314)
definitionCHROMAT_FILE: MSMg01no395_o08.b1 PHD_FILE: MSMg01no395_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:53 2005CHROMAT_FILE: MSMg01no395_o08.g1 PHD_FILE: MSMg01no395_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTCCACTATAATTTGCGAGCGCTAAAAGAATCACAATTCGGTACGAAT
GCGNGGAANTCAGAAGTACTAAAGAACGTCAGNAAACAGGAATTCCCATC
TTAATGAAAGCTATGAAAAAACTTCACATTATTCAATCTTTTATGTGTAT
AGGTGTTTTGTCTGCATGCATGTCTGTATGCTGCACCCATATTTGTTGCT
CAAAGAGACCAGAGAAGGTGTTTAATGCCCTACAATTTTAGGCACAGGTG
GATATTATCTGACATATAGGAGCTAGGAATTATACCTGGGTCCTCTGGAA
GAGCCTCAAGCACTCTTAATTTTTTTATTATCNCCCAAGCCCTCAGATTA
TTGGACCTTGAATTTTAAGGCTTTTCTCTGCTCAGACTTTATTTTTGTAT
CACTGTCAATTACAAAACACCCCCCCCCATGTATTCTTGTCCCGCTGTTT
GTTCCCCCTTTTACCTTGACTCTCCAATAATCCTTGTTCTTCTTTAAATT
TCCACCCCTATCCTTTTTTTTTACTACTATGCTATAATTGTCTTCACTAT
TCATTTTTTGCTCCTTTTTTCCCCTCCTATTTTTCTTTTTTTCCTTCCCC
CTTTTTTTTCCCTACCCGCTCTTTTCCTTCTCCCCCTATATCTTTTCCCT
ATTCTCTATATCCTCTATCTCTCCTCTTTTTTTTTCCCCCCCTTTCCCTC
TTTTTTTTCCCTTTTCCCCTAATATTTCCCGCACTTCCCCTTTTTCTTTT
TTCTTCTTCCCCTTTTTTATCCTCGTTTTTTN
CTTCTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCTGTGATCTGTGAAGCT
CTGTCAGTCAGTGTTGTAACCTGCTTTACGTTCCAGCAGCCTCTGACATC
CTGGGTAATCATTTTTCTTTGTTCACATCTGCAAGGTTGTGGGCTAGATC
TGGGATCATGGCCTTCAATAGTGTCTGCTCCATGTTGTGATCAGTTGCTA
GCCAGAAGCATTAAGTCCTTTCTGTATAAATGAATAAGTAGATGGGGCTT
ACTAGTTAACTCATGTTGCTTATTTGTTAGATGCACTGATTCCCAAAGAC
ACAGTGGAAGGAAGGTAGCTGGAACACTAGTATTTTGTTATGAACAGTTT
GCCAGTATGTACACCACAATCCTCTATTCATATATATATATATATATGCA
CACACATATATATATACCTATATATATATGTATATATATACCGCATTTTC
TTTTGAGACATTTTATTAATCCCCATGTATATCACTGACGGGTTTTTATC
TTCCCCCGATTATTCCCTTGTTCCCCCTTAACCTTTTCCATTTCCCCTCA
TTTATTTTTTTTTCCCCTGCCTTCCCCCCCCACTTGGCAATCTCCTTCTT
TCTTCCTCTTTACTCTCTTCAATACTCCACTTTTATTCTCGTACCCTCTC
CTTATTTTTCACTTTTTTCCTCCTACCCTTCCATTACTTTCTCTTCCCCC
TACCTTTACCCCTTCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_o08.g1 MSMg01no395_o08.g1 CHROMAT_FILE:
MSMg01no395_o08.g1 PHD_FILE: MSMg01no395_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:53 2005
         (236 letters)



>mm_chr19_11698986_11699621
          Length = 636

 Score =  416 bits (215), Expect = e-121
 Identities = 233/243 (95%), Gaps = 7/243 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctctgtgatctgtgaagctctgtcagtcagtgttgtaacctgctttacgttccagca 60
           |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 503 cttctctgtgctctgtgaagctctgtcagtcagtgttgtaaactgctttacattccagca 444

                                                                       
Query: 61  -------gcctctgacatcctgggtaatcatttttctttgttcacatctgcaaggttgtg 113
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcctctggcctctgacatcctgggtaatcatttttctttgttcacatctgcaaggttgtg 384

                                                                       
Query: 114 ggctagatctgggatcatggccttcaatagtgtctgctccatgttgtgatcagttgctag 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggctagatctgggatcatggccttcaatagtgtctgctccatgttgtgatcagttgctag 324

                                                                       
Query: 174 ccagaagcattaagtcctttctgtataaatgaataagtagatggggcttactagttaact 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccagaagcattaagtcctttctgtataaatgaataagtagatggggcttactagttaact 264

              
Query: 234 cat 236
           |||
Sbjct: 263 cat 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)