BAC Information

Click to search

BAC

Clone NameMSMg01-396I16
Chromosome19 (Build37)
Map Location 60,754,344 - 60,918,374
singlet/doubletdoublet
Overlap geneNanos1, Eif3s10, 1810055E12Rik, Sfxn4
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
Downstream genePrdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396I16.T7 (MSMg01no396_i16.b1)MSMg01-396I16.TJ (MSMg01no396_i16.g1)
ACCAG497095AG497096
length755760
length of high quality
(start - end)		495 (34 - 528)450 (64 - 513)
definitionCHROMAT_FILE: MSMg01no396_i16.b1 PHD_FILE: MSMg01no396_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:41 2005CHROMAT_FILE: MSMg01no396_i16.g1 PHD_FILE: MSMg01no396_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,754,344 - 60,754,834)(60,917,925 - 60,918,374)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAACTG
GTTACCAGATTTAGATGAGAGTCAGTTGATTGTCAGCTCACAGCCAAGCT
GAGAAGCAAGTAAGTCCCCATAAAGCCCATGAAGCTCTAAAGGAGAATCT
CACCATAATACAGGAAGTGAGCAGCTATTGTCCTCATCTGACACAGGGGA
ACACTGACCAGTACTGGTCCCAAACCCTTCTAGACTAGATATTTGAGCAT
AAGACTTTGTAAATGTTGCTTCTTTCTCAGAAGAGAAGTGCTGAATCTCA
CTAACCAAGCCATCCTCTAGTCTCAGGCTTGTTCCAATACTTACTAAAAC
CTAAATAAAATGAACCTCTTTCAAGGTATGTCTCAGCACAGGGTTTCACC
CAAAGAAACCCAAAGTACAGTTACTTAAAACTTTGAAAAGAAACTGTTAC
ACACCTCAAGAGGAAGCCACAAACAAGAAGCTTCCTGTGTTAGCTACTTT
TCCCAACACTGGGACAGAGTACCTGACAGAAACCAGAGAGGAAGGATTTT
TATTTTGGCTCACAGTTTGAATAGAACAGTTCATCCTGGGGGGAAAGAAT
GCCGTAAAACCGCTCCTGCGTTGGGGGGGGGAGGAAAAGGTTGGTTTTCC
TCCCCTTGGAAGAAAACCTGTGCCCAAAAGAAAAGGCTATAAACCTCCCC
CCTTCCCAATACCTCTTGTGGGCGGCAAAACTTTTGTTAAAAATCTTTAC
CCCAG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAACAAGTTGCTCTATCTAACTGGTCAATGTCCCATT
CCCTGAGTAGATAAACCTCACCCAGAGCTTAGTCCATGTGCCTTTTAGAG
CCTGCTGGTAGGTGGTTGTGCAGTGATCCAGGCATATGCCTGTAACTGCA
TGCAGAGCCAAATCAGCCACCACTGAAACAGAGGGCCTGCTTCAGAAAAG
AGGACAAAAGCGTTGGACTGCGTGTGAGCTATGCCTTGTCTCTTACAGGA
CGAGGTTTTATCCACAGACTCTGCTGTCACTCGTGATCCTGAGAATGAGT
TCCACATTCTTTATGATGGGACTGATGGTGCCAGTGTCATTCAGCATGTT
TCCACAGATTGGACAGGTAAGGACCCCACTGCTTTCCCACAGATGAGAAA
CTGGGTTTTTATTTCATGTTTGTAGTAAAAGAAGTAATTTTAGTCAGGTG
GTAGTGATGCACACCTTTAATCCCATCCCTTAAGAGGCACAGCCCGCTTA
ATCTCTGACTTTGATGCCCGTCTGATCTACCGACCTAGTTCTAGGTCTAT
ACTTAGACAACCCTGTTTTAAATCTACTCCTTCCTCTATTATACCCCCTA
GTATTTCTTTTTTCAACCCCCTATTTTCCCCGTGCTTTCTCGTATGGCCT
TTCGTTTCCCCTCTTGTCTCTCCCACCGTATTCCTCCCTGTCCTTATCCT
CTTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_i16.b1 MSMg01no396_i16.b1 CHROMAT_FILE:
MSMg01no396_i16.b1 PHD_FILE: MSMg01no396_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:41 2005
         (495 letters)



>mm_chr19_60754140_60755034
          Length = 895

 Score =  911 bits (471), Expect = 0.0
 Identities = 486/491 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaactggttaccagatttagatgagagtcagttgattgtcagctcacagccaa 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaactgggaaacagatttagatgagagtcagttgattgtcagctcacagccaa 264

                                                                       
Query: 65  gctgagaagcaagtaagtccccataaagcccatgaagctctaaaggagaatctcaccata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgagaagcaagtaagtccccataaagcccatgaagctctaaaggagaatctcaccata 324

                                                                       
Query: 125 atacaggaagtgagcagctattgtcctcatctgacacaggggaacactgaccagtactgg 184
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 atacaggaagtgggcagctattgtcctcatctgacacaggggaacactgaccagcactgg 384

                                                                       
Query: 185 tcccaaacccttctagactagatatttgagcataagactttgtaaatgttgcttctttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccaaacccttctagactagatatttgagcataagactttgtaaatgttgcttctttct 444

                                                                       
Query: 245 cagaagagaagtgctgaatctcactaaccaagccatcctctagtctcaggcttgttccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaagagaagtgctgaatctcactaaccaagccatcctctagtctcaggcttgttccaa 504

                                                                       
Query: 305 tacttactaaaacctaaataaaatgaacctctttcaaggtatgtctcagcacagggtttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacttactaaaacctaaataaaatgaacctctttcaaggtatgtctcagcacagggtttc 564

                                                                       
Query: 365 acccaaagaaacccaaagtacagttacttaaaactttgaaaagaaactgttacacacctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccaaagaaacccaaagtacagttacttaaaactttgaaaagaaactgttacacacctc 624

                                                                       
Query: 425 aagaggaagccacaaacaagaagcttcctgtgttagctacttttcccaacactgggacag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagaggaagccacaaacaagaagcttcctgtgttagctacttttcccaacactgggacag 684

                      
Query: 485 agtacctgaca 495
           |||||||||||
Sbjct: 685 agtacctgaca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_i16.g1 MSMg01no396_i16.g1 CHROMAT_FILE:
MSMg01no396_i16.g1 PHD_FILE: MSMg01no396_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:42 2005
         (450 letters)



>mm_chr19_60917725_60918574
          Length = 850

 Score =  862 bits (446), Expect = 0.0
 Identities = 449/450 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacaagttgctctatctaactggtcaatgtcccattccctgagtagataaacctcaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 caacaagttgctctatctaactggtcaatgtcccattccctgagtagataaacctcaccc 591

                                                                       
Query: 61  agagcttagtccatgtgccttttagagcctgctggtaggtggttgtgcagtgatccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agagcttagtccatgtgccttttagagcctgctggtaggtggttgtgcagtgatccaggc 531

                                                                       
Query: 121 atatgcctgtaactgcatgcagagccaaatcagccaccactgaaacagagggcctgcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atatgcctgtaactgcatgcagagccaaatcagccaccactgaaacagagggcctgcttc 471

                                                                       
Query: 181 agaaaagaggacaaaagcgttggactgcgtgtgagctatgccttgtctcttacaggacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agaaaagaggacaaaagcgttggactgcgtgtgagctatgccttgtctcttacaggacga 411

                                                                       
Query: 241 ggttttatccacagactctgctgtcactcgtgatcctgagaatgagttccacattcttta 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggttttacccacagactctgctgtcactcgtgatcctgagaatgagttccacattcttta 351

                                                                       
Query: 301 tgatgggactgatggtgccagtgtcattcagcatgtttccacagattggacaggtaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgatgggactgatggtgccagtgtcattcagcatgtttccacagattggacaggtaagga 291

                                                                       
Query: 361 ccccactgctttcccacagatgagaaactgggtttttatttcatgtttgtagtaaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccccactgctttcccacagatgagaaactgggtttttatttcatgtttgtagtaaaagaa 231

                                         
Query: 421 gtaattttagtcaggtggtagtgatgcaca 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 gtaattttagtcaggtggtagtgatgcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |