BAC Information

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BAC

Clone NameMSMg01-397I15
Chromosome19 (Build37)
Map Location 36,652,497 - 36,652,728
singlet/doubletsinglet
Overlap geneHectd2
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
Downstream geneLOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397I15.T7 (MSMg01no397_i15.b1)MSMg01-397I15.TJ (MSMg01no397_i15.g1)
ACCAG497855AG497856
length859798
length of high quality
(start - end)
235 (71 - 305)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no397_i15.b1 PHD_FILE: MSMg01no397_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005CHROMAT_FILE: MSMg01no397_i15.g1 PHD_FILE: MSMg01no397_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCCCATCCGCGGAATTC
AGAAGTGTTACAGAAAATCCATTTCATCTTACTTCATTGCGCCTTCGTGT
TTAGCTGTCATGAATCTAAGTCAGTGTTTACACATTCTTTTTAACTTTGA
GGCTATATAGCCTTTTGAATCTGCAGGTTATGTCATGAAAATAAGATAAC
TTTTTGTTGTAGTTTTAATGGAATTTTGAGAGGAATTAGAAGTCTTCTTT
TTTGGCCATTTATCTTCAAAAACATCCGTTTGTTCTTTTGTTTTGTTTTT
AACTCACCGGGCATTTTTCTAAATGCANACCAACATTGTATATACATATA
CACCTATTTCTTCCCCTGCCCGTTCCCACAGCCCCATTATACTCCCCTGA
ACCATTTTCTTATCCTCCCCACCCCCAGAGTTGTTTGCCTCGCATCACCT
TTTCCTCTTTACTTTCTCCCGGCTTGCTCCGTTTTTCCTTTAATTTTCTC
ATCCCCTCTCCCTTCGCCTCTCTTTGCCTTCTCTACTTTCTTTCTTCCCC
TCCCCTCCCCTCCCTCTCTGCTCCACCTCCCTCCCCCCCTCCTCACCACT
AGTCCCCTTTCATCCACTGTTACACTTTTCCATATACGTCACCTCACCCT
TTTTCTCCCTCCCTCCCTTCCTTTCTCCCCTTATCCCCCATCCCGCTTCC
CTTTTATTTTTCCCCCTCCCCCCTCTATCCCCCGATTTTACGTCTCCCGC
TCCTTCGCACAATCTCCCTCTTATATCTATCCCCCTCCCTCCCCTTTTCC
TCCCGCTCCCCTAAGCCCTATATTACTCTTTTCCATCCTCGCTCTCCGCC
ATGCTTATC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCCAGAAACTCAGAAATCTGCCTGCCGCTGCCTCCCAAGTGC
TGGGATTAAAGACTTGCACCACTACTGCTTGCAAGCTCTGAATTTTTAAG
CACAAGAATGATGTCTTGGGTTGATATACTTTAGTTAAGAAGGACAGTTA
GCAAGATGTGCTACAGAAGCCCCCCCCCCAAAAAAGTCATAGCATATTTT
TAGACTTTTCTAGAACTTTGGACTTTGATAGATTAGGCCTTTGTTTTAGT
ATTGGCAGGTAGTGTTATTAACATGTTGAGNTTTACAACCTGCATAGNAC
TTCTGTCATGGACCCAGCTGTGCTAATGTCTGGCACCCTGTCACAGTTAG
TAAAACAGCCCCCCCCCCCCCTGTATCAGAATATGCCCTTGACGAGATTC
CTAGGCATCGCCCCTGTGTTGTTACATTTCCCCCTTTGGCCTTGTGCAAC
TCTGGCGCTTCCCCTATTTCCCCCACCCCTTTTGTGTCGCTTTTCTTCCT
TCTCCTCCGACTCCTCACCCCTTTCTTTCTTTTCTATATTTCTCTTTTTC
CTCTTTCTTGCCACACCCTTTCTTGTTTCCATTCTTTTTCATACTCCTCT
CTTCCCTTTCCTTTTTTTTTCCCACTCCGCCTCCTCCGTCTACCATCTTT
TGCCGCTCCTCCTTATCCTTCTCCCCTCCTCTTTTTCCATTCTCCCCCCC
CTCTTCCTATACTTCTTTCCCCCCCTCCCCTCTTCTTTTCTCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_i15.b1 MSMg01no397_i15.b1 CHROMAT_FILE:
MSMg01no397_i15.b1 PHD_FILE: MSMg01no397_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:00 2005
         (235 letters)



>mm_chr19_36652297_36652931
          Length = 635

 Score =  402 bits (208), Expect = e-117
 Identities = 226/236 (95%), Gaps = 8/236 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcatcttacttcattgcgccttcgtgtttagctgtcatgaatctaagtcagtgttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcatcttacttcattgcgccttcgtgtttagctgtcatgaatctaagtcagtgttta 260

                                                                       
Query: 61  cacattctttttaactttgaggctatatagccttttgaatctgcaggttatgtcatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacattctttttaactttgaggctatatagccttttgaatctgcaggttatgtcatgaaa 320

                                                                       
Query: 121 ataagataactttttgttgtagttttaatggaattttgagaggaattagaagtcttct-- 178
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  
Sbjct: 321 ataagataactttttgttgtagctttaatggaattttgagaggaattagaagtcttctca 380

                                                                   
Query: 179 --tttttggccatttatcttcaaaaacatccgtttgttcttttgttttgtttttaa 232
             |    |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 act----ggccatttatcttcaaaaacgtccgtttgttcttttgttttgtttttaa 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)