Query= MSMg01no401_n03.b1 MSMg01no401_n03.b1 CHROMAT_FILE:
MSMg01no401_n03.b1 PHD_FILE: MSMg01no401_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:32 2005
(287 letters)
>mm_chr19_16732864_16733549
Length = 686
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 1 aaaaaaatcgttttctaggatttttttatagatctcaattaataggataagaacgaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaaaaaatcgttttctaggatttttttatagatctcaattaataggataagaacgaaata 427
Query: 61 tttagtatttttatgtatttgtcaactgcatttaatttaatacatattttttactgtcta 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 426 tttagtatttttatgtatttgtcaactgcatttaatttaatacata-tttttactgtcta 368
Query: 121 atgtcagttctctcggtgaaatagaagattctcttcctcctggaaaagcagtctattata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atgtcagttctctcggtgaaatagaagattctcttcctcctggaaaagcagtctattata 308
Query: 181 catgggctgacccagtgggctctagaaagctgaagtggagctgtgggcaaagctatggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 catgggctgacccagtgggctctagaaagctgaagtggagctgtgggcaaagctatggtg 248
Query: 241 aagtaacccataaggatgtaagcaccaagaactgcaagtctgaccgt 287
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 247 aagtaacccataaggatgtaagtaccaagaactgcaagtctgaccgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space: 188206
Effective search space used: 188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no401_n03.g1 MSMg01no401_n03.g1 CHROMAT_FILE:
MSMg01no401_n03.g1 PHD_FILE: MSMg01no401_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:32 2005
(478 letters)
>mm_chr19_16575156_16576036
Length = 881
Score = 868 bits (449), Expect = 0.0
Identities = 472/481 (98%), Gaps = 3/481 (0%)
Strand = Plus / Plus
Query: 1 acagggcgagctatgattcctcacccgtagttacgactcccaagcaaggctcttgagaag 60
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acagggcgagctatgcttcctcacccgtagttacgactcccatgcaaggctcttgagaag 260
Query: 61 tcggcttcttggcctgctactctgacagctaattccttttgtttatggtagctataagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcggcttcttggcctgctactctgacagctaattccttttgtttatggtagctataagtg 320
Query: 121 ctttttcctgctttgaattggtctgacttgttgtcattacattcagtccaga---ttttt 177
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 321 ctttttcctgctttgaattggtctgatttgttgtcattacattcagtccagatttttttt 380
Query: 178 tttagtcatttggaaggtcttcttttgatatgggtgaggccaaaggaggctgttcctggg 237
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaggcatttggaaggtcttcttttgatatgggtgaggccaaaggaggctgttcctggg 440
Query: 238 tttccactgttgtatcaggtgtctttaatgattaggcagttctaacacaaaccctacata 297
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 441 tttccactgttgtatcaggtgtctttagtgattgggcagttctaacacaaaccctacata 500
Query: 298 taaatgccttcttagaagcccaagggcagtagttcctcatcttcctaatgctgggacact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatgccttcttagaagcccaagggcagtagttcctcatcttcctaatgctgggacact 560
Query: 358 ttaataaagatccccatgtagtggtgactccagagcataaagttatctcactcctacttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaataaagatccccatgtagtggtgactccagagcataaagttatctcactcctacttc 620
Query: 418 ataactgtaattgctactgttatgggtcgtaatgtaaatatctgatatgcaggatatatg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataactgtaattgctactgttatgggtcgtaatgtaaatatctgatatgcaggatatatg 680
Query: 478 g 478
|
Sbjct: 681 g 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 881
Length adjustment: 10
Effective length of query: 468
Effective length of database: 871
Effective search space: 407628
Effective search space used: 407628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
