BAC Information

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BAC

Clone NameMSMg01-403N24
Chromosome19 (Build37)
Map Location 17,884,465 - 17,884,942
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403N24.T7 (MSMg01no403_n24.b1)MSMg01-403N24.TJ (MSMg01no403_n24.g1)
ACCAG502682AG502683
length798809
length of high quality
(start - end)		482 (40 - 521)442 (71 - 512)
definitionCHROMAT_FILE: MSMg01no403_n24.b1 PHD_FILE: MSMg01no403_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:19 2005CHROMAT_FILE: MSMg01no403_n24.g1 PHD_FILE: MSMg01no403_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AATTTCTATGGCCTACACTGGGGAGGGAGTTACTAACTCTAAATATATGG
GTAAAAACAAAGGCAAGTACCGTATCCTACAAATATCCTTTGAAAGACAA
AACAGACCAGAAGACAGGTTAACAGACACCCCTGAGACAAGACGAGTGCA
AAGCAGCAGTGGGGAAATTTCCAAGCTACTTTTCTCTGTCTTTATCATGG
TGGTGATCACGCAACCATAGGCACTTGTCAACATTCATCACATTATGCAA
CAGTCCTCCATGCAAATGATCCTTCAGCAAATTTGATATTTTACAGGTGG
TCCACGAGGAAAACACCCACACTTAGATACCATGATGCAGCTACAAAAAC
AGAAAGTGAAGTTGTTTGCTTAGATTTCATGCTATCACCAAATCAACTTT
ATTCACTTGGAAAGCCTCCCTTCACCCATGGCAGCCTTTTCTACATCGAA
TCTTCCTGAAACAGCAGTCCTGGGACTCTTGTGCAGCATGAAAAGCACCC
CTCTTTGTGGAATGGAAGAAATGTTTCACCATTCTCCTCGGAAAACACCA
CTCTCCTCTAACAAAAAGTTATTGATTATGGGACATGAGGGGAATGGAAA
AGGTAAAACCCCTGCGCAATTTTGGGGGAATAAAGTAAAGACTAGAAAAC
CTCCTTAAACCCCGGGCGCCTTTCCCAACCAAATGGCCTTGAAATAAAAG
CAAAAATTTGAATTTTTGTCGGGGGGGGACTCCAGGACCCCCTCTCCN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAACTGAGGCATACCGAAGGGTTGAGAAG
CACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACTAGTCAGGATGGTTAAGATGATA
AATTCAGGTAACAACAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTCGTGGTTCCTCAGAAATTTGGACATAGTACTATTGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGAGCTTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGTTCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACAAATGGAGTACTACTCAGCTATTATAAACAATGAATTTA
TGAAATTCTCAGGCAAATGGAAGTATCTGGGAGGATATTATCCCTGAATG
AGGAATCCCGATCCAAAAAAAATCTTTTGATATAAACTCCCCGAAAAGGG
GATTTACCCGAATTTTTTTTTGTTGTACCCGTGGGAAAAAAAACCGGTTC
CTTCTGCTTGTTGTGTTACCCTTTTATCACCTGAAAATAGCTCTTTCCCC
CCCTTACCTTTGGGACCTTTTTTTATTATATTTTGACGATTAAACACTTT
GCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_n24.b1 MSMg01no403_n24.b1 CHROMAT_FILE:
MSMg01no403_n24.b1 PHD_FILE: MSMg01no403_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:19 2005
         (482 letters)



>mm_chr19_17884261_17885142
          Length = 882

 Score =  909 bits (470), Expect = 0.0
 Identities = 476/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatttctatggcctacactggggagggagttactaactctaaatatatgggta 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaatttctatggactacactggggagggagttactaactctaaatatatgggta 264

                                                                       
Query: 65  aaaacaaaggcaagtaccgtatcctacaaatatcctttgaaagacaaaacagaccagaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaacaaaggcaagtaccgtatcctacaaatatcctttgaaagacaaaacagaccagaag 324

                                                                       
Query: 125 acaggttaacagacacccctgagacaagacgagtgcaaagcagcagtggggaaatttcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaggttaacagacacccctgagacaagacgagtgcaaagcagcagtggggaaatttcca 384

                                                                       
Query: 185 agctacttttctctgtctttatcatggtggtgatcacgcaaccataggcacttgtcaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctacttttctctgtctttatcatggtggtgatcacgcaaccataggcacttgtcaaca 444

                                                                       
Query: 245 ttcatcacattatgcaacagtcctccatgcaaatgatccttcagcaaatttgatatttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcatcacattatgcaacagtcctccatgcaaatgatccttcagcaaatttgatatttta 504

                                                                       
Query: 305 caggtggtccacgaggaaaacacccacacttagataccatgatgcagctacaaaaacaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggtggtccacgaggaaaacacccacacttagataccatgatgcagctacaaaaacaga 564

                                                                       
Query: 365 aagtgaagttgtttgcttagatttcatgctatcaccaaatcaactttattcacttggaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtgaagttgtttgcttagatttcatgctatcaccaaatcaactttattcacttggaaa 624

                                                                     
Query: 425 gcctcccttcacccatggcagccttttctacatcgaatcttcctgaaacagcagtcct 482
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttcccttcacccatggcagccttttctacatcgaatcttcctgaaacagcagtcct 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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