Query= MSMg01no404_b17.b1 MSMg01no404_b17.b1 CHROMAT_FILE:
MSMg01no404_b17.b1 PHD_FILE: MSMg01no404_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:39 2005
(456 letters)
>mm_chr19_21747957_21748812
Length = 856
Score = 859 bits (444), Expect = 0.0
Identities = 453/456 (99%)
Strand = Plus / Minus
Query: 1 aattaaaaatactatcatcaatttggaggcataagtatgagcaccccagagatttgtatt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 656 aattaaaaatactatcatcaatttggaggtataagtatgagcaccccagagatttgtatt 597
Query: 61 atttagatgaattgatggcttaatgaaaccaatgagacgcgtagaatgctaatgaatagc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atttagatgaattgatggtttaatgaaaccaatgagacgcgtagaatgctaatgaatagc 537
Query: 121 agtgagcctagaaaccaaccgtgagcaactaaaatcctggagtctacgtattcattctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtgagcctagaaaccaaccgtgagcaactaaaatcctggagtctacgtattcattctag 477
Query: 181 agtaagtttttcccttctgaaaactatggagcaactctactatagttcttaaatctctat 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 476 agtaagtttttcccttctgaaaactatgtagcaactctactatagttcttaaatctctat 417
Query: 241 tactgatacttatgagctcattatattttctcgatttaccaaggctctgacatagattac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tactgatacttatgagctcattatattttctcgatttaccaaggctctgacatagattac 357
Query: 301 taccaaacaagcgcctggttttaagagtgatggcttttctttccctctcaggtacagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taccaaacaagcgcctggttttaagagtgatggcttttctttccctctcaggtacagtgt 297
Query: 361 tgcttggtagtccaggttggttgccacttggcaaatacgaggattacgagcatacactac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgcttggtagtccaggttggttgccacttggcaaatacgaggattacgagcatacactac 237
Query: 421 aatatctaatggatagcaatcttttcaaggataact 456
||||||||||||||||||||||||||||||||||||
Sbjct: 236 aatatctaatggatagcaatcttttcaaggataact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_b17.g1 MSMg01no404_b17.g1 CHROMAT_FILE:
MSMg01no404_b17.g1 PHD_FILE: MSMg01no404_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:39 2005
(446 letters)
>mm_chr19_21572009_21572854
Length = 846
Score = 803 bits (415), Expect = 0.0
Identities = 441/455 (96%), Gaps = 9/455 (1%)
Strand = Plus / Plus
Query: 1 ctgagtaagtacaagaggaaagcaaagcatggagctgacccgcagaacatgttccacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ctgagtaagtacaagaggaaagcaaagcatggagctgacccgcagaacatgttccacaga 251
Query: 61 caagttttagtgttcatttcataaagtcccccacaagaggataagtgatttccataggag 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 caggttttagtgttcatttcataaagtcccccacaagaggataagtgatttccataggag 311
Query: 121 aggtacagtcatagggactttccacatgtattttcatttaatatttaggctacccctatc 180
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 312 aggtacagtcataaggactttccacatgtattttcatttaatatttagggtacccctatc 371
Query: 181 aga---------atatgccctccattttatacttgatgcaaaggaggacccagaaagagg 231
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agataataatgaatatgccctccattttatacttgatgcaaaggaggacccagaaagagg 431
Query: 232 tatgatcagagaaataaggttctacatgtctaagagctatgtaaggccaaaagtcctaca 291
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatgctcagagaaataaggttctacatgtctaagagctatgtaaggccaaaagtcctaca 491
Query: 292 agcaccagacattcaagtcaaaaggtcaggagagagtcaggttccagagacagatgtggg 351
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 492 agcaccagacattcaagtcaaaaggtcaggagagagttaggttccagagacagatgtggg 551
Query: 352 ctttatcagcagtaaaaataaaactctgggcataaatgagatctccagggtgttgttcac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctttatcagcagtaaaaataaaactctgggcataaatgagatctccagggtgttgttcac 611
Query: 412 agtaaagaaaggacaagcctgacctaactctgatt 446
|||||||||||||||||||||||||||||||||||
Sbjct: 612 agtaaagaaaggacaagcctgacctaactctgatt 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
