BAC Information

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BAC

Clone NameMSMg01-405D01
Chromosome19 (Build37)
Map Location 24,929,561 - 24,929,952
singlet/doubletsinglet
Overlap genePgm5
Upstream geneApba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik
Downstream geneLOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405D01.T7 (MSMg01no405_d01.b1)MSMg01-405D01.TJ (MSMg01no405_d01.g1)
ACCAG503680AG503681
length755777
length of high quality
(start - end)
454 (76 - 529)281 (81 - 361)
definitionCHROMAT_FILE: MSMg01no405_d01.b1 PHD_FILE: MSMg01no405_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:06 2005CHROMAT_FILE: MSMg01no405_d01.g1 PHD_FILE: MSMg01no405_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGTCTTCTCCTGACTGCCTTCAGATCAAGATGTAGAACTT
TGGGCTCCTCCAGCACCACATCTGTTTGCACACTGCCATGTTTCCTGCCA
TGATGATACCTCTGAACCTGTAAGCCACCCCCAGTTAAGTGTTCTCCTTT
ATAAGAGTGGCCTTGGCTGAGGTGTCTCTTCACAGCAATGGATGCCAACT
AAGACACCTTGCTTATCACGTGGGGGTGACCTCAGGTACTCATGTTTACA
ATGGAAGCACTTTACCAACTGAGCTATCTCCCCAGTCTTTAGGGAGCCTT
CTTTTAGAATCCTTACATGTCCTTACAATGGAGCTACTTAGTTATTCCTT
CTGGAAAGGAGACACCCTGTTTCTTTCCTTCTTTTCACACTGACAACTCT
GGAGCAGGGGGCTGGGAAAATAGCCACCCCCACAACTGAAGTTTATGACA
ACTCAGTGTGTGTCGCTTTTGGTTTTTTGGGAATGCACCAGGAAATCTTG
GATTTTTATGCAGTCAAATTTCACTGGATAAATAATTAAATATAAGAAGA
TACTTTTTTTTTTGCTTTCTACCCTCCACTTAATATATGGGGAAGGTATT
CCAGCTTTTGTGTTGTGTTGGCGCAATGATCTAACCCTGACCAATACCTG
TAGCTTTTTTTTATTTTATAATTTTCCTGGTTGCTATATCTAATTACCTC
CAACC
TTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAACAGTCAGAAGTGTGG
GAGATTAGTCAGGAACTCTGAGAAGAGGTAACAAGCCATGTGGTGCTTTG
TAGAACAGAATAACCAGATAATTGAGTCATGAGCTAGTCAGGGGAACAAG
CCCTAACTTATGGCCGAGGCGTTTATTTATAAAATATTCAGTCTCAGAGC
CCTTACTCTGGGAACAAAGTGGCTGGGTAGAAAAGCTTGATGTTATAACT
CACAATTATTTACGTCTCTGTTGTTGTTGTTGTTGTTGTTTTCTCTAGCT
AACTTTGTACTTCCTGGTGACAAATCCTTCCCATATCCTCGAGGTCACTG
TTTCATGGACTATGTGTATAAGTGACAAGCTCTTTCTCCATCTTTGTTTA
CACGAATCTTTTTTTTTCCCCAGTTATTATTTTTTCCGACTTTCCCCTTC
TTGCCTATTTTCCTGACATTGTTTAGTATACTTTTTTTCCTCTTTGACGG
ACTTTTATGCTCCTGTTTTGCTCTTGGCAACTCTTGGTAATTTCTTCCCA
TCTATATCCTCTCCCCCCGGTCTTTTTTTCCCGACTCTTTTGTTGTTGGC
TTTCTGTTTTTCTCCCCCTTCCTCTCTTTTTTTTCTTACCGCCATTTCTC
CTTTATCCTCTTACTTTGCCCACCCTCTTTTTTTCCCCCTCCTCTTTTTT
TTCTTTTCTCTTCCCTTCCTTCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_d01.b1 MSMg01no405_d01.b1 CHROMAT_FILE:
MSMg01no405_d01.b1 PHD_FILE: MSMg01no405_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:06 2005
         (454 letters)



>mm_chr19_24929099_24929952
          Length = 854

 Score =  696 bits (360), Expect = 0.0
 Identities = 384/392 (97%)
 Strand = Plus / Minus

                                                                       
Query: 61  ccatgtttcctgccatgatgatacctctgaacctgtaagccacccccagttaagtgttct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| 
Sbjct: 854 ccatgtttcctgccatgatgatacctctgaacctgtaagccagccccagttaactgttcg 795

                                                                       
Query: 121 cctttataagagtggccttggctgaggtgtctcttcacagcaatggatgccaactaagac 180
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 794 cctttataagagtggccttggctgtggtgtctcttcacagcaatgaatgccaactaagac 735

                                                                       
Query: 181 accttgcttatcacgtgggggtgacctcaggtactcatgtttacaatggaagcactttac 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 734 accttgcttatcacgtgggggtgacctcaggtactcatgtttgcaatggaagcactttac 675

                                                                       
Query: 241 caactgagctatctccccagtctttagggagccttcttttagaatccttacatgtcctta 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 674 caactgagctatctccccagtctttagggagccttcttttagaacccttacatgtcctta 615

                                                                       
Query: 301 caatggagctacttagttattccttctggaaaggagacaccctgtttctttccttctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caatggagctacttagttattccttctggaaaggagacaccctgtttctttccttctttt 555

                                                                       
Query: 361 cacactgacaactctggagcagggggctgggaaaatagccacccccacaactgaagttta 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cacactgccaactctggagcagggggctgggaaaatagccacccccacaactgaagttta 495

                                           
Query: 421 tgacaactcagtgtgtgtcgcttttggttttt 452
           ||||||||||||||||||||||||||||||||
Sbjct: 494 tgacaactcagtgtgtgtcgcttttggttttt 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)