BAC Information

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BAC

Clone NameMSMg01-406H13
Chromosome19 (Build37)
Map Location 7,273,728 - 7,273,908
singlet/doubletsinglet
Overlap geneOtub1
Upstream geneEhd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1
Downstream geneCox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406H13.T7 (MSMg01no406_h13.b1)MSMg01-406H13.TJ (MSMg01no406_h13.g1)
ACCAG504659AG504660
length736758
length of high quality
(start - end)
184 (327 - 510)242 (82 - 323)
definitionCHROMAT_FILE: MSMg01no406_h13.b1 PHD_FILE: MSMg01no406_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:47 2005CHROMAT_FILE: MSMg01no406_h13.g1 PHD_FILE: MSMg01no406_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAATTATCC
GCGGAATTCAAATTTTAGCTTTCCACAACACGGTGAGTGAGCCCACCAGT
TTCAGGCTGGGTTAATGTATGGTAAGGGTGGCCTGTTGCCATCTTCCTCA
TCTTACCTTTTGTCCCTGGGTGGGGCAGTTCATGGACCTTATCGAGCAGG
TGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAG
AGTACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTA
CCTACAGCGGGAGAGCATTTTTTTTTAGCACTTCATCGAGGGTGGCCGGA
CTGTTAAGGAGTTCTGCCAGCAGGTGCCACCTCCTCTCCCACTCTGCTTT
GGGGCCCTCCTTTTCTCTTTTGTGTCAGGGTGGGGCATGCCAGGGTGAGC
TGTGGGACCTGGGGGAGGGATCCTGGGACAGGCCTGACCTGCCCCTGTGC
CACAGGAAGTGGAACCCATGTGCAAGGATAGCGACCACATTCACATCATA
AGCCCTGGCCCAAGCCCTCACTGTGTCCATCCCAGTGGAGTACTTGGACC
GCGTCTAGTGCTTCTTCTACCTACCCACACGTCTTTCCCTGAGGGCTCCT
TATTTTTTTGTCTACCTTCTCCTACCGTACCTGGTCACTTAGTATTTTCC
CCTACTAATATTGATCGGGCTGGTCTTGTTTTTTCT
NCCCCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCAACAGCAAAAATGG
TTTAAAACTGGATGGTGGTTGTGCACCATGCACAATAATGACCAAAGCCA
GCCGGGCGTGGTGGCGCATGCCTTTAGACTTAACACTTGGGAGGCAGAGG
TAGGCAGATTTCTGAGTTCCAGGCCAGCCAGCTTGTGGCATGCAAATTAC
ACAGCGATGGACACTATGGGACAGCATGGTGACTGCACTGGAAAAGGAAC
CAACTGCCAAGTGCTGCTGGGCCTGTTGTCACCACAACTGGCTTTTGCTA
TTAGCGGAAGAGGTCCTACTTCAGCTGAGCCTGTGTGCTGACTTTCATCT
TTTCTCCTCTGAGCACAGTGTCCTGAGCTGTACATTCACCCTCACATCTG
TGGGCTTCAAGCCCTGACTCTACCAACCACACATGGGTAATTCTAGTACA
AAGGATTGCAACGAGTGTGGTATGCTGATTTATCCTTGTAACCCCTCAAA
TTGGTAGGTTGTGGTCCGATCAATCATCCTTAGTTCCCTCACCAGCTTCG
ATTGCTCCTACTTTACTCCCATAACCCTCCTCTAATCTTATCACCGTCAA
TCTTGTTTTTTCATCTTCTATGCCTTCATACGGACAGCTGCCTATTATTG
TTCATTCTTTATTTACATTTATCTCCTTTTCCCTCTTTTTTCCCTTCCTC
TCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_h13.b1 MSMg01no406_h13.b1 CHROMAT_FILE:
MSMg01no406_h13.b1 PHD_FILE: MSMg01no406_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:47 2005
         (184 letters)



>mm_chr19_7273528_7274111
          Length = 584

 Score =  342 bits (177), Expect = 6e-99
 Identities = 180/181 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacttcatcgagggtggccggactgttaaggagttctgccagcaggtgccacctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacttcatcgagggtggccggactgttaaggagttctgccagcaggtgccacctcctc 322

                                                                       
Query: 61  tcccactctgctttggggccctccttttctcttttgtgtcagggtggggcatgccagggt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcactctgctttggggccctccttttctcttttgtgtcagggtggggcatgccagggt 262

                                                                       
Query: 121 gagctgtgggacctgggggagggatcctgggacaggcctgacctgcccctgtgccacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgtgggacctgggggagggatcctgggacaggcctgacctgcccctgtgccacagg 202

            
Query: 181 a 181
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)