Query= MSMg01no411_h24.b1 MSMg01no411_h24.b1 CHROMAT_FILE:
MSMg01no411_h24.b1 PHD_FILE: MSMg01no411_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:34 2005
(439 letters)
>mm_chr19_54690862_54691700
Length = 839
Score = 721 bits (373), Expect = 0.0
Identities = 416/435 (95%), Gaps = 8/435 (1%)
Strand = Plus / Plus
Query: 5 gaattcactccctgtgacgggataggtacttttatcataaaagttgatatcataagcgtc 64
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 205 gaattcactccctgtgatgggataggtacttttatcataaaagttggtatcataagcatc 264
Query: 65 ttgtgggactggttcttttgagagtgaatcatgcagcaaattgcctcttgtggtttactt 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 ttgtgggactggttcttttgagagtgaatcatgcagcaagttgcctcttgtggtttactt 324
Query: 125 gtttcctctcgccaccctcactgtcttgttcttcccactgtcgaatgcccttgaccctac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttcctctcgccaccctcactgtcttgttcttcccactgtcgaatgcccttgaccctac 384
Query: 185 tatgaggttggataaggccctcaccagatgtgactacttgatcttgagatttcatctttt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 tatgaggttggataaggccctcaccagatgtgactacttgatcttgagatttcacctt-- 442
Query: 245 aaggctctaaagcaaaacttttgcttctgcattatcctacctctagtgtctactgtctgc 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 443 ------ctaaagcaaaacttttgcttctgcattatccaacctctagtgtctactgtctgc 496
Query: 305 tatattctatttactatttctataccaactgaaaaacaatgaaccaagacattcaatgat 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 tatattctatttactatttctataccaattgaaaaacaatgaaccaagacattcaatgat 556
Query: 365 gcaggtaagctgatgtgcatggagagtgtattccttctgagtgtggttcacagaccatga 424
|||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 gcaggtaaactgatgtgtatggagagtgtattctttctgagtgtggttcacagaccatga 616
Query: 425 catttcgcaagatgc 439
||||||||||||||
Sbjct: 617 tatttcgcaagatgc 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_h24.g1 MSMg01no411_h24.g1 CHROMAT_FILE:
MSMg01no411_h24.g1 PHD_FILE: MSMg01no411_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:34 2005
(478 letters)
>mm_chr19_54860537_54861414
Length = 878
Score = 851 bits (440), Expect = 0.0
Identities = 470/482 (97%), Gaps = 4/482 (0%)
Strand = Plus / Minus
Query: 1 cagagggggagacatttccattaggctgggctggggtggtttcttggcaggcaaccttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagagggggagacatttccattaggctgggctggggtggtttcttggcaggcaaccttca 495
Query: 61 caaaagaatggagagaagaaaatgacttgagaaactgccactggcaacaccaggattgca 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctaaagaatggagagaagaaaatgacttgagaaactgccactggcaacaccaggattgca 435
Query: 121 aagcttatgcagaagttgaactaaatatacttaatctgcatttggaccatgtctggcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aagcttatgcagaagttgaactaaatatacttaatctgcatttggaccatgtctggcctg 375
Query: 181 aggaggtgttttcaaataattacgttggcttaaatgacatttggagaccagggttatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aggaggtgttttcaaataattacgttggcttaaatgacatttggagaccagggttatctc 315
Query: 241 atgataatggtcttattgagccatactatagttattctaagtgctaggccagggcagcta 300
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 314 atgataatgggcagattgagccatactatagttattctaagtgctaggccagggcagtta 255
Query: 301 gctcatatttagcggtactggttttccactcatacaagagaagaataacg----ttgagt 356
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 254 gctcatatttagcggtactggttttccactcatacaagagaagaataacgttgattgagt 195
Query: 357 ttttctagacagcatggcttcttaagcttcagatcctgaccctaatatgagtgtgcatta 416
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 194 ttttgtagacagcacggcttcttaaacttcagatcctgaccctaatatgagtgtgcatta 135
Query: 417 ctgaatgtaggggtcacaacaataattggcaataagtaagatgtctctgaacatggaatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ctgaatgtaggggtcacaacaataattggcaataagtaagatgtctctgaacatggaatg 75
Query: 477 ac 478
||
Sbjct: 74 ac 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
