Query= MSMg01no412_d18.b1 MSMg01no412_d18.b1 CHROMAT_FILE:
MSMg01no412_d18.b1 PHD_FILE: MSMg01no412_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:32 2005
(531 letters)
>mm_chr19_46397715_46398643
Length = 929
Score = 971 bits (502), Expect = 0.0
Identities = 520/526 (98%), Gaps = 2/526 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttctatgtctccttggacgcccccagctcaggtaaggcttggacttagcccag 63
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 727 ggaattcttctatggctccttggacgcccccagctcaggtaaggcttgaacttagcccag 668
Query: 64 gggaggagggcaggaccttctctacagcagctgaggcctggcaaagaggcatcccttcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gggaggagggcaggaccttctctacagcagctgaggcctggcaaagaggcatcccttcaa 608
Query: 124 acctccctcctgtttggcttccctgggctcctaagtcagccaaaagtctctccaggctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 acctccctcctgtttggcttccctgggctcctaagtcagccaaaagtctctccaggctcc 548
Query: 184 agtctttcatctgtgtcgtgagggttgggctgggctctggaggaagctgggtagtagagg 243
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 547 agtctttcatctgtgtcctgagggttgggctgggctctggaggaagctggatagtagagg 488
Query: 244 aggggaggtccagatatcaggggttactcctaggtatctagaaaatagtctggtttcttc 303
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 487 aggggaggtccagatatcaggggttactcctagg-a-ctagaaaatagtctggtttcttc 430
Query: 304 atagttatttgataggggcttgatttaagatgagtcccgccggcatttggatcaagtaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atagttatttgataggggcttgatttaagatgagtcccgccggcatttggatcaagtaaa 370
Query: 364 gggtgtggcagatagacagtagtaaatgatgaagagtttccagcccatgtaagaccgtgg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gggtgtggcagatagacagtagtaaatgatgaagagtttccagcccatgtaagaccgtgg 310
Query: 424 ggaagctatccaacatgacttacctcctgaccttgctatctatgcatacaggtgctaagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggaagctatccaacatgacttacctcctgaccttgctatctatgcatacaggtgctaagc 250
Query: 484 ccccagagcaggtcctcccatcacgtggggtgggctccaagcaagg 529
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccccagagcaggtcctcccatcacgtggggtgggctccaagcaagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 929
Length adjustment: 10
Effective length of query: 521
Effective length of database: 919
Effective search space: 478799
Effective search space used: 478799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_d18.g1 MSMg01no412_d18.g1 CHROMAT_FILE:
MSMg01no412_d18.g1 PHD_FILE: MSMg01no412_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:32 2005
(485 letters)
>mm_chr19_46209560_46210444
Length = 885
Score = 920 bits (476), Expect = 0.0
Identities = 482/484 (99%)
Strand = Plus / Plus
Query: 1 taggcctggtaggcgcttaataaatgtcttttacagactagaagtttattgctgttagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcctggtaggcgcttaataaatgtcttttacagactagaagtttattgctgttagag 260
Query: 61 acccaagcctctgaaaggaacagtgagaaacaagtcctaaaatcataggctaaactgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccaagcctctgaaaggaacagtgagaaacaagtcctaaaatcataggctaaactgcag 320
Query: 121 aagagatcgctgcgtggaagcacgggtgaccagacctaccggctgtcctcccagagacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagatcgctgcgtggaagcacgggtgaccagacctaccggctgtcctcccagagacca 380
Query: 181 ccaggtggcgtcgcagcaccagcagagaacgatccctgtcagctagctggtcacaccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggtggcgtcgcagcaccagcagagaacgatccctgtcagctagctggtcacaccaag 440
Query: 241 cttcatacttcttttactccaggagaccctgcttccctatcctggaggaaaggagtgaga 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcatactccttttactccaggagaccctgcttccctatcctggaggaaaggagtgaga 500
Query: 301 cggcaaccttagaagcctggacgctcactcggttcctgtacatccagctgtccttttgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cggcaaccttagaagcctggacgctcactcggttcctgtacatccagctgtccttttgga 560
Query: 361 caatgggaaggatgaagggaaggagggctcaaccgcaagtctgaatcatcaggcctttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatgggaaggatgaagggaaggagggctcaaccgcaagtctgaatcatcaggcctttga 620
Query: 421 cagtccgcgcacgtttatttcattgatctttgaaaacgggatagggggagtctggagaag 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 cagtccgcgcacgtttatttcattgatctttgaaaatgggatagggggagtctggagaag 680
Query: 481 gcgg 484
||||
Sbjct: 681 gcgg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
