BAC Information

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BAC

Clone NameMSMg01-412D21
Chromosome19 (Build37)
Map Location 43,994,978 - 43,995,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp
Downstream geneLOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412D21.T7 (MSMg01no412_d21.b1)MSMg01-412D21.TJ (MSMg01no412_d21.g1)
ACCAG509061AG509062
length780784
length of high quality
(start - end)		483 (48 - 530)358 (79 - 436)
definitionCHROMAT_FILE: MSMg01no412_d21.b1 PHD_FILE: MSMg01no412_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:32 2005CHROMAT_FILE: MSMg01no412_d21.g1 PHD_FILE: MSMg01no412_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATATCCTTGACCCAAGACAGCAGGGAGAGGCTGTGTCTCACC
GTGGGTGTACCTTGCGCTTAGGAGACCTTAAAGCTTGAGCCTACAGTGAC
ACACTTCCTCCAACAGTACCTAGTGCTGCCACTCTCTATGGCCTACCATT
GAATCACATGAGTCTATGGGGGTCATCACACCCAACTTAGTCTCATTTAA
ACAACAACAACAACAGCAAAAGCCCATCTTTTTGTTGTTGTTTGGCAACT
ATAAAGTTCCCAAGAGAATATTCTTTTTGAAAAGATTGAGTTTCTCGGGG
TAGGTGAGTGTTGTGGTAAATATTTAAAAAGACCCTCCACCTCTCCGCGT
TCCATCCAGCTACTCTCTGCCCGCCAACTTTCCGGTGGGGCTGCAGCTCC
TAAGTTCCCTTTGCTGCTTTGCCAACCCCACACAGCAACAGTCCACCCCA
CTATCAGCCACCACAACATCCAGCAACCCAGTAGAAACAAAACTCTAGAA
GTTTATAATTAACCAGTCAGGTTTATATATCAATAAATTCTCAAATCACA
ACATGCCCATATAATAATTTTCAAAAACCGCTGAATCTTGATAAAAGCTG
CCCACCTAGGCTAAAAAGAATTTTTCCCTAACTCCCTGCGGGTATTTTAA
AAACCCCCGTTATCCAAATTCTTCTCTCTGTCCCCCCCCTCCCATTTTGT
GGTTTCCTCTCTTTCCGAAAAATTTACTGG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGAAATACGACCTTCAGA
GAATCCTCGTAAGTGGAGTCAGGCCCCCAGTGAGCGCCTTCAACCCCGAG
AGCAGCTCTGCGCGCGCGCGGCTCTCCTGACCACACAGGCAAGTGTCCTC
TCTGTGGCCGGATCAGAGGTGTCAGCAAATGAGGCCTGGAGCAGCTTCAG
GAAGGAAGGAAATCAGAGAAGCTGGGAAGGCAGCCTTTCCTCCACTGCTC
CGGGTCACAGAGCTGACCCCGGATAGGATTGAGGTCAGCACTGGCGGCCA
GGCGATTCCTCAAGGAAAACCCCAAAGGATGAGCAGGGAAGGTAACCTGC
AAACTGGGGGACCCCACGGGGAGGGGGAGGGAGTGTCNTANTGNNTCTGN
GANNCCNCCTCNGNTCTTGTGAGCGCTGGCTCTGCCCCGGTTGGCGCAGG
GTCCTTTTTCTCTCTCCTTTCTTTTCTGTTCCCTTTCCCCCTCTTTCCCC
TTTTCCTCTCCTCCCCCCTTTTTTCCCCCCCCTTTCTTTTTTCCCCTTTT
TCTTTCCCCCCCCCCTCCTCTCCCTTTCCCCCCCTCTCCTTTCCCCCTTT
CCCCTTTTTTTTCTCCCCTTTTTCTTTTTTTTTTTTTCCTTTTCCCCCTC
CCTCCGTTTTTTTCCCCCCCCCCTTTCTCCTTTTTTCCTCCGTTNTCCCC
CCTTTTCCCCTCCCTTCCTCCCCTCTTTTCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_d21.g1 MSMg01no412_d21.g1 CHROMAT_FILE:
MSMg01no412_d21.g1 PHD_FILE: MSMg01no412_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:32 2005
         (358 letters)



>mm_chr19_43994778_43995535
          Length = 758

 Score =  661 bits (342), Expect = 0.0
 Identities = 354/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggaaatacgaccttcagagaatcctcgtaagtggagtcaggcccccagtgagcgcc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tccaggaaatacgaccttcagagaatcctcgtaagtgaagtcaggcccccagtgagcgcc 260

                                                                       
Query: 61  ttcaaccccgagagcagctctgcgcgcgcgcggctctcctgaccacacaggcaagtgtcc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ttcaaccccgagagcagctctgcgcgcgcgcgtctctcctgaccacacaggcaagtgtcc 320

                                                                       
Query: 121 tctctgtggccggatcagaggtgtcagcaaatgaggcctggagcagcttcaggaaggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgtggccggatcagaggtgtcagcaaatgaggcctggagcagcttcaggaaggaag 380

                                                                       
Query: 181 gaaatcagagaagctgggaaggcagcctttcctccactgctccgggtcacagagctgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatcagagaagctgggaaggcagcctttcctccactgctccgggtcacagagctgacc 440

                                                                       
Query: 241 ccggataggattgaggtcagcactggcggccaggcgattcctcaaggaaaaccccaaagg 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggataggaaggaggtcagcactggcggccaggcgattcctcaaggaaaaccccaaagg 500

                                                                     
Query: 301 atgagcagggaaggtaacctgcaaactgggggaccccacggggagggggagggagtgt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagcagggaaggtaacctgcaaactgggggaccccacggggagggggagggagtgt 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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