Query= MSMg01no413_o16.b1 MSMg01no413_o16.b1 CHROMAT_FILE:
MSMg01no413_o16.b1 PHD_FILE: MSMg01no413_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:45 2005
(277 letters)
>mm_chr19_57458270_57458946
Length = 677
Score = 472 bits (244), Expect = e-137
Identities = 265/272 (97%)
Strand = Plus / Minus
Query: 5 gaattcttcccattctgccaaataaaactttcaaaaaatgtccttcaaagaaggctgctt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattcttcccattctgtcaaataaaactttcaaaaaatgtccttcaaagaaggctgctt 417
Query: 65 ctaggtcacacttctccagtggtttgggggctcctggccactcccatcgtgagcagacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 416 ctaggtcacacttctccagtggtttgggggctcctggccactcccatcgtgagcagatag 357
Query: 125 cacagtagtctcggaactatgaggaaagcatttggatcattaaagagcagccgagaaaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cacagtagtctcggaactatgaggaaagcatttggatcattaaagagcagccgagaaaca 297
Query: 185 agcggagatgaacctgaacttcctgagatactctgtgctgtgcctgaggaggcgtcagaa 244
|||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 296 agcggagatgaacctgaacttcctgagatactctcagctgtgcccgaggagccgtcagaa 237
Query: 245 ccaggcaggaaggatagggatcatcacactga 276
|||||||||||||||||||||| |||||||||
Sbjct: 236 ccaggcaggaaggatagggatcgtcacactga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no413_o16.g1 MSMg01no413_o16.g1 CHROMAT_FILE:
MSMg01no413_o16.g1 PHD_FILE: MSMg01no413_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:45 2005
(248 letters)
>mm_chr19_57284435_57285082
Length = 648
Score = 414 bits (214), Expect = e-120
Identities = 244/264 (92%), Gaps = 16/264 (6%)
Strand = Plus / Plus
Query: 1 aaggccagcccaggaaacttagtgagagcggggttcattttgtcaaggacaggaagatag 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagcccaggaaacttagtgagagcagggttcattttgtcaaggacaggaagatag 260
Query: 61 ctcagtggtagagagcttgtgtaaatccctaatttcagtcccacctattgcaaaataaag 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 261 ctcagtggtagagagcttgtgtaagtccctaatttcagtcccacctattgcagaataaag 320
Query: 121 agaaggaaggaaggaaagaaggaagggaggaaggaagaaaagaaggaagggaggaagg-- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggaaggaaggaaagaaggaagggaggaaggaagaaaagaaggaagggaggaaggga 380
Query: 179 --------------atgtacatatgtgcacacacatgcacacatacaatcatgcacatac 224
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagggaggaaggatgtacatatgtgcacacacatgcacacatacaatcatgcacatac 440
Query: 225 acatacatgtatacacacatgcac 248
|||||||||| |||||||||||||
Sbjct: 441 acatacatgtgtacacacatgcac 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
