Query= MSMg01no416_a11.b1 MSMg01no416_a11.b1 CHROMAT_FILE:
MSMg01no416_a11.b1 PHD_FILE: MSMg01no416_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:34 2005
(584 letters)
>mm_chr19_24542829_24543811
Length = 983
Score = 1038 bits (537), Expect = 0.0
Identities = 570/581 (98%), Gaps = 1/581 (0%)
Strand = Plus / Minus
Query: 4 gaattctactcgtgtgcctctttacctctttcctcatgcaaaagtgggaacaaagtcttt 63
||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 783 gaattctactcgtgtgcttctttgcctctttcctcatgcaaaagtaggaacaaagtcttt 724
Query: 64 tactttagtccctaagacctgagcatagcaagatacttacccaagtgttttcagagtgga 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 723 tactttagtccctaagacctgagcatagcaagttacttacccaagtgttttcaaagtgga 664
Query: 124 tgaatcaatgggtacatggataaatgataatttttttctgtttggttggttggtttggtt 183
||||||| || ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 663 tgaatcagtgagtacatggataaatgataa-ttttttctgtttgtttggttggtttggtt 605
Query: 184 ttgattttgtgatatttgtggtgagattctttttcttcccattaactgtgaccgaaagtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttgattttgtgatatttgtggtgagattctttttcttcccattaactgtgaccgaaagtg 545
Query: 244 actggaaagctagttattaagcacttactcgggaacactgtgcctttaagtgaggaatgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 actggaaagctagttattaagcacttactcgggaacactgtgcctttaagtgaggaatgc 485
Query: 304 agtaagagtcttagtggaaagagtctagtcacatggctgagctcttaatagcttcctaag 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agtaagagtcttagtggaaggagtctagtcacatggctgagctcttaatagcttcctaag 425
Query: 364 agatcagaagttcattcattaagccatttttatgtgaaaccctattatgaggcttccact 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 424 agatcagaagttcattcattaagccatttttatgtgaaaccctattatgaggctcccact 365
Query: 424 ggtccatagaatatattaatgtctcttaggatatattaatgtgaaaagcagagactcctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggtccatagaatatattaatgtctcttaggatatattaatgtgaaaagcagagactcctg 305
Query: 484 gtcagcaggacacacgttctgcttatattctaacagggtggagaggagaattatgtgtgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtcagcaggacacacgttctgcttatattctaacagggtggagaggagaattatgtgtgt 245
Query: 544 acatatatgtaaggggtaacttgccttaccccttataaggc 584
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acatatatgtaaggggtaacttgccttaccccttataaggc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_a11.g1 MSMg01no416_a11.g1 CHROMAT_FILE:
MSMg01no416_a11.g1 PHD_FILE: MSMg01no416_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:34 2005
(559 letters)
>mm_chr19_24369769_24370727
Length = 959
Score = 996 bits (515), Expect = 0.0
Identities = 548/559 (98%)
Strand = Plus / Plus
Query: 1 tgcagtgggggaagttccctcccatggctgtgttcaggtcccgctcacgtgctcaggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagtgggggaagttccctcccatggctgtgttcaggtcccgctcacgtgctcaggtgg 260
Query: 61 ctgccgctttcacttactggaggaaaagcaggaaagaagaaacaggcgtgaggcttggcg 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ctgccgctttcacttactggaggaaaagcaggaaagaagaaacagacgtgaggcttggcg 320
Query: 121 ttagcaccagtttgtaactcctgcctgtgcgtgggaccttaggttgttatttctcctggt 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 321 ttagcaccagtttgtaactcctgcctgtgcgtggggccttaggttgttatttctcccggt 380
Query: 181 gacttgcatctgaagaagcatgcattaaggttggggcctgcgacgtgttaatttccctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttgcatctgaagaagcatgcattaaggttggggcctgcgacgtgttaatttccctgt 440
Query: 241 ttattgatatctatccccagctacatcacatcagtcacttaggatgaagcaatgataaga 300
||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattgagatctagccccagccacatcacatcagtcacttaggatgaagcaatgataaga 500
Query: 301 tgtactactgtcttctgagtttacaaggctcagggagggcatatgagaactcaggtggta 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgctactgtcttctgagtttacaaggctcagggagggcatatgagaactcaggtggta 560
Query: 361 tatgagaattaaaaaccaagaagcacaacgactgggccatggtcctgaactcgtgaatgc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tatgagaattaaaaaccaagaagcacaacgactgggccatggtcctgaactcgtgattgc 620
Query: 421 tatgctcatttccaaacagtatcccagtggccggcagtaaaacaagccatcagatatcta 480
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgctcatttccaaacagtagccaagtggccggcagtaaaacaagccatcagatatcta 680
Query: 481 acctaaaaatgctaactaaaagcagagccaggcaaggtcggcatgatggtacatgctatg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 acctaaaaatgctaactaaaagcagagccaggcaaggtcggcatgatggtacgtgctatg 740
Query: 541 gtgccagcacttggaagat 559
|||||||||||||||||||
Sbjct: 741 gtgccagcacttggaagat 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
