BAC Information

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BAC

Clone NameMSMg01-416C11
Chromosome19 (Build37)
Map Location 61,015,521 - 61,103,418
singlet/doubletdoublet
Overlap geneGprk5, LOC671322
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3
Downstream geneBC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416C11.T7 (MSMg01no416_c11.b1)MSMg01-416C11.TJ (MSMg01no416_c11.g1)
ACCAG512039AG512040
length716728
length of high quality
(start - end)		674 (36 - 709)538 (77 - 614)
definitionCHROMAT_FILE: MSMg01no416_c11.b1 PHD_FILE: MSMg01no416_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:43 2005CHROMAT_FILE: MSMg01no416_c11.g1 PHD_FILE: MSMg01no416_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,102,883 - 61,103,418)(61,015,521 - 61,016,058)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAT
CTCTTACCATATTTATTTATAAAGCAGGTGGAGTGCCACCATTTGATCAC
ATGTTAATCTCTGTTTTCACCTCCATCCCCTTTGCAATGTAATGTGATGC
TGACCTGATTCCTCTGTCACCTGAACATATGACCAATAGAAAAGGAAAGC
AGACTTGAGTCAGAAAAGTCAAATCCATTCCAGGTGGAACCCAGTCCCTT
TCCAGAGTCCAGTGACCCCTGGACATATATCAATATACACATGAAAAACC
ATGAGATGTCACATTCTGCAATCAAAAACCACTTAACACTGAAGCCAGAC
AAACAGACATCAAGAGCAAACACAGCATGGATAAACCCAAGCAGCATTGT
GTGGGTCCAAGATCTGGAAGGAAAAGCTACATGCACAGTTGATCCCGAAA
GTCTCAAACTCAAAAAAGTCAAATTCCACAGTGACCAAAATCAGAACAAT
AGTGGGAGATCAGGGAATTCATGACAGAGGCACATGAAGGAAGTCGAGTA
TGATGAAAATGTCCTATGCTATGACTCTGGTGATTGCACAGCTGTTTATA
AAAAGTCATTTAATTATATACTTGAAATTGATGACTACACTGCAGTCAAG
CAGTAACATTTCAATAAAGATAACCAAAGGATGGCACATGTCTCTCTCTC
CCTCTCCCTCTCCCTN

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTTTCTTCTTCAGATTATTG
TCAAACATGCTTATCACCAACACTTGGAAGCAGTCTTGCTGGTAAATGGC
ATATTGATAGGTCCTGCAGGCCCCCTTCCACAGATCTGTTTCAGGATCAG
GCCATAGTTCCCCTCAGAATCTCATGCCCAGATCTTGTTGGGTTAATCAT
CTCCCGAAAGTGCTTTCTTCTAGCCAGAACATGCTCCTCTTTTTGTTGAG
AGAAGATCTCTGCTTAGGCCCTGATATCTTAAAAACATTTACAGATGAAG
AAACTGAGGAGTTCAGAGTAAATGAGCTCCATGGATGTCTGGAAGCTAAA
TTCAAAAGCTGGGTGTGTGGAGGGGGGCTGTGATGCTTTCTACTCCACCC
ACCCTGCTTCCAGAAAGGTTGAAGGAGGTGTCAGACATGCTACATTTTCC
ATCTGCATAGTTTCCAAATCACATCTTGATAACTGGGTCAGAGCCATGTG
AAAAAGCAGAAGTGAATGTCAGAGGGTGTGGCTTAGTTCCTTCCTCTGGT
TCTGAGTCAAGAGGATTTGGAATGGTTCATGTTGCTGTGTTTTCTGGATC
TCTGTGTCATAGTCTGTGCTGCTCAGCCTGCCGAGCATGATACTGTTCTA
ATAGATAACCCTTCTTGAGGGAAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_c11.b1 MSMg01no416_c11.b1 CHROMAT_FILE:
MSMg01no416_c11.b1 PHD_FILE: MSMg01no416_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:43 2005
         (674 letters)



>mm_chr19_61102883_61103956
          Length = 1074

 Score = 1013 bits (524), Expect = 0.0
 Identities = 533/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtatctcttaccatatttatttataaagcaggtggagtgccaccatttgatca 64
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaattctgtatctcataaaatatttatttataaagcaggtggagtgccaccatttgatca 477

                                                                       
Query: 65  catgttaatctctgttttcacctccatcccctttgcaatgtaatgtgatgctgacctgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 catgttaatctctgttttcacctccatcccctttgcaatgtaatgtgatgctgacctgat 417

                                                                       
Query: 125 tcctctgtcacctgaacatatgaccaatagaaaaggaaagcagacttgagtcagaaaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcctctgtcacctgaacatatgaccaatagaaaaggaaagcagacttgagtcagaaaagt 357

                                                                       
Query: 185 caaatccattccaggtggaacccagtccctttccagagtccagtgacccctggacatata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 caaatccattccaggtggaacccagtccctttccagagtccagtgacccctggacatata 297

                                                                       
Query: 245 tcaatatacacatgaaaaaccatgagatgtcacattctgcaatcaaaaaccacttaacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcaatatacacatgaaaaaccatgagatgtcacattctgcaatcaaaaaccacttaacac 237

                                                                       
Query: 305 tgaagccagacaaacagacatcaagagcaaacacagcatggataaacccaagcagcattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgaagccagacaaacagacatcaagagcaaacacagcatggataaacccaagcagcattg 177

                                                                       
Query: 365 tgtgggtccaagatctggaaggaaaagctacatgcacagttgatcccgaaagtctcaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tgtgggtccaagatctggaaggaaaagctacatgcacagttgatcccgaaagtctcaaac 117

                                                                       
Query: 425 tcaaaaaagtcaaattccacagtgaccaaaatcagaacaatagtgggagatcagggaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcaaaaaagtcaaattccacagtgaccaaaatcagaacaatagtgggagatcagggaatt 57

                                                                   
Query: 485 catgacagaggcacatgaaggaagtcgagtatgatgaaaatgtcctatgctatgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  catgacagaggcacatgaaggaagtcgagtatgatgaaaatgtcctatgctatgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_c11.g1 MSMg01no416_c11.g1 CHROMAT_FILE:
MSMg01no416_c11.g1 PHD_FILE: MSMg01no416_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:43 2005
         (538 letters)



>mm_chr19_61015321_61016258
          Length = 938

 Score = 1033 bits (534), Expect = 0.0
 Identities = 537/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctttcttcttcagattattgtcaaacatgcttatcaccaacacttggaagcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctttcttcttcagattattgtcaaacatgcttatcaccaacacttggaagcagtct 260

                                                                       
Query: 61  tgctggtaaatggcatattgataggtcctgcaggcccccttccacagatctgtttcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctggtaaatggcatattgataggtcctgcaggcccccttccacagatctgtttcagga 320

                                                                       
Query: 121 tcaggccatagttcccctcagaatctcatgcccagatcttgttgggttaatcatctcccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggccatagttcccctcagaatctcatgcccagatcttgttgggttaatcatctcccg 380

                                                                       
Query: 181 aaagtgctttcttctagccagaacatgctcctctttttgttgagagaagatctctgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtgctttcttctagccagaacatgctcctctttttgttgagagaagatctctgctta 440

                                                                       
Query: 241 ggccctgatatcttaaaaacatttacagatgaagaaactgaggagttcagagtaaatgag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccctgaaatcttaaaaacatttacagatgaagaaactgaggagttcagagtaaatgag 500

                                                                       
Query: 301 ctccatggatgtctggaagctaaattcaaaagctgggtgtgtggaggggggctgtgatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccatggatgtctggaagctaaattcaaaagctgggtgtgtggaggggggctgtgatgc 560

                                                                       
Query: 361 tttctactccacccaccctgcttccagaaaggttgaaggaggtgtcagacatgctacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctactccacccaccctgcttccagaaaggttgaaggaggtgtcagacatgctacatt 620

                                                                       
Query: 421 ttccatctgcatagtttccaaatcacatcttgataactgggtcagagccatgtgaaaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccatctgcatagtttccaaatcacatcttgataactgggtcagagccatgtgaaaaag 680

                                                                     
Query: 481 cagaagtgaatgtcagagggtgtggcttagttccttcctctggttctgagtcaagagg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaagtgaatgtcagagggtgtggcttagttccttcctctggttctgagtcaagagg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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