BAC Information

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BAC

Clone NameMSMg01-416H16
Chromosome19 (Build37)
Map Location 50,760,119 - 50,760,665
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
Downstream geneLOC100042924, LOC100042928
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416H16.T7 (MSMg01no416_h16.b1)MSMg01-416H16.TJ (MSMg01no416_h16.g1)
ACCAG512286AG512287
length698718
length of high quality
(start - end)
302 (42 - 343)547 (60 - 606)
definitionCHROMAT_FILE: MSMg01no416_h16.b1 PHD_FILE: MSMg01no416_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:06 2005CHROMAT_FILE: MSMg01no416_h16.g1 PHD_FILE: MSMg01no416_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATAGCGAGAGGATCCGCGGAATTCTCACTTGTGCAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTCCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACANCTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTGCTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGTTGTTTCATCTG
GTANGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTTATATA
GCCAGAAGCTGGAAAGAACCCCAGATGCCCCTCACCGGAGGATGGGATAC
CGAAAATGTGGTACCTCTTACCCATGGAGTACTACCCCGCCTTTTAAAAA
AATGGGATTTTTGGAATTCCCAAGCCCAATGGGATGGACCCTGGAGGGCA
AATTCCCTGGATGGAGGTAACCTTTTTCCCAAGGGAATTCCCCCCAAATT
GGGCTCTCCTGGTAAAAGGGGGATTTTATCCCCCCAACCCTTGGGATACC
CCCCAAATTTAATAAAAAACACTTTTTTTCTAGACCCCTGTGAAATCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTTTACCTGTATATGAAACTGAGCTTGAAAGTTGGGTCCTG
GGGACACCTCCCATGCCAGCACGTTTATAGAGAAGTATCCTTCCTTTCTT
TACGTGCTCTGGAATGTTTCCTATAAGCCACTGAAAATGTGTGTTTTGTT
TCTGAATACTTTTTAATGTTAGACCATTTGTCAAATGTTTTAATGATGAA
GGATTCATGTGGTTATTGCTGCTTTTTCTTACAGCTCTAGAGATTGAACC
TAGGACCTCTCATATTATAGGCAAGCCCTCTTCCACTGAGTTACAGCCCC
AGGCTCAAACAGGTTCTAATTAGGGTAGCAGTACAGTAAATCGTGAAATC
TGGTGTGAGGTCCCTACTTAGTGTTCCCGACAGAATCGCACCGTATCTGT
AGATCAATTAGGGAGAACACAACGTCTGAACACAACATTATTTCCCCCAC
CCATTCATGGGTGTGCTACCTTTCTGCATCTGTTTAATCTTCAAGCTCTC
TTAGCTATATTTATTAGTTTTCAATATTTCAGTGAATTCTAGGAATTTGA
TGTATTTGATGGCATTATGAACCTGGTCATTTTATCTTACTATGTACTGA
CTTTTTTTAGACATAAAATCCAAATTATTTTACTTTGGTTTTGAATCCAC
CTGCTTTGAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_h16.g1 MSMg01no416_h16.g1 CHROMAT_FILE:
MSMg01no416_h16.g1 PHD_FILE: MSMg01no416_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:07 2005
         (547 letters)



>mm_chr19_50759919_50760865
          Length = 947

 Score = 1050 bits (543), Expect = 0.0
 Identities = 546/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttacctgtatatgaaactgagcttgaaagttgggtcctggggacacctcccatgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttacctgtatatgaaactgagcttgaaagttgggtcctggggacacctcccatgccag 260

                                                                       
Query: 61  cacgtttatagagaagtatccttcctttctttacgtgctctggaatgtttcctataagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgtttatagagaagtatccttcctttctttacgtgctctggaatgtttcctataagcc 320

                                                                       
Query: 121 actgaaaatgtgtgttttgtttctgaatactttttaatgttagaccatttgtcaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaaaatgtgtgttttgtttctgaatactttttaatgttagaccatttgtcaaatgtt 380

                                                                       
Query: 181 ttaatgatgaaggattcatgtggttattgctgctttttcttacagctctagagattgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatgatgaaggattcatgtggttattgctgctttttcttacagctctagagattgaac 440

                                                                       
Query: 241 ctaggacctctcatattataggcaagccctcttccactgagttacagccccaggctcaaa 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggacctcacatattataggcaagccctcttccactgagttacagccccaggctcaaa 500

                                                                       
Query: 301 caggttctaattagggtagcagtacagtaaatcgtgaaatctggtgtgaggtccctactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggttctaattagggtagcagtacagtaaatcgtgaaatctggtgtgaggtccctactt 560

                                                                       
Query: 361 agtgttcccgacagaatcgcaccgtatctgtagatcaattagggagaacacaacgtctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgttcccgacagaatcgcaccgtatctgtagatcaattagggagaacacaacgtctga 620

                                                                       
Query: 421 acacaacattatttcccccacccattcatgggtgtgctacctttctgcatctgtttaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacaacattatttcccccacccattcatgggtgtgctacctttctgcatctgtttaatc 680

                                                                       
Query: 481 ttcaagctctcttagctatatttattagttttcaatatttcagtgaattctaggaatttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcaagctctcttagctatatttattagttttcaatatttcagtgaattctaggaatttg 740

                  
Query: 541 atgtatt 547
           |||||||
Sbjct: 741 atgtatt 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)