BAC Information

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BAC

Clone NameMSMg01-417K22
Chromosome19 (Build37)
Map Location 45,481,757 - 45,684,850
singlet/doubletdoublet
Overlap geneBtrc, EG627889, Poll, 5330431N19Rik, Fbxw4
Upstream geneScd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417K22.T7 (MSMg01no417_k22.b1)MSMg01-417K22.TJ (MSMg01no417_k22.g1)
ACCAG513205AG513206
length807797
length of high quality
(start - end)		487 (45 - 531)444 (75 - 518)
definitionCHROMAT_FILE: MSMg01no417_k22.b1 PHD_FILE: MSMg01no417_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:38 2005CHROMAT_FILE: MSMg01no417_k22.g1 PHD_FILE: MSMg01no417_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,481,757 - 45,482,239)(45,684,407 - 45,684,850)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGTAAAGTTCCTGATGGTGTTTTACCTTTACAGAATAAACTCAC
TGGGTATTTAAATGATTATAGGTAGAATATGCCACCATTCACGTGCAGAG
TGGCCGTGTGAGACTAGTGTTTTGTATTATGTAGTGTGCACATATACACA
CATCTAAATGTAGATATTGACATGATTAAACCATTCGTTTTTCTATTTGT
CTTATCTGTTTTTAAACTTGCCTTTAATGGATTATTTTTTGGTATTCTGT
TTCTTTTGTTCTCATAGTAGGAATTTTGTCTTAATTTTAGAGGTTAAAGT
ATCCTTTTTTTTTTTTTTAAAGACAAGGTCTTGCTCTGTAGCCCAGGCTA
GCTTTGAACCTATCCTTCCTTCTGCTTCAGTTTTCTGACTGTGTGAGCTA
TAGGTGTCCATTTCCAGACCCTGTAATATGCATTTTAAAGTGTTAATCAT
AGTTGAAATTATATATCCACAATCTCTAATTTCAGAATACTTCAATTATA
CCATGTAAAATTTATTATCTGTTATGTATGTTTCCATTTCTCCCCCCCGG
AAATTGGCCCGTCAAAATTCTGCCTCTATGGGGTTCCCTGTTCCGGAAAA
ATCAAGCTTTGTCTCCCCCCTCTTTTATTTATCACAAACTTTCTTTGGTC
TCTTGTCGGCATATTGTACCCCCTGCGTCTTATTTACTAACAATGTTGCA
CTCTTTCCTATTGCCCCCTTTCCCTTCATTTTATCCCGCCTTTATATCCC
CTGTGTG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCTACATGGAGAA
ACTCTGTCTTGAAATAGCAAAAACAAAGCAAAACAAAACAAAAACCAAAA
ACCATAACATAGCCAGTAAGGAAGCTGAGGCTAGTGAGCAGTTGCTGTTT
CAGCGGTCATGGCCACAGATGCGCAAGTCTGAGCACTGGCTTTGGGTCCA
GAGGTCATGCTGTTCGCTGCGGTCCTACACTGCTCATGGTCCTGTCTCAT
GCTGAACACTTTCAGTTGGGATTAGAACTCTTTGACTGTCTTGAAATTAT
TTTCAATTTTAAACAATGAATCTTGACTTGCTTCTTTGACCTGAGCAAGC
CTATTTGAATTTTATTTTCTGGGACCCTTTAGCCCGGCTCGACAAACTCA
GACTGTACCTGCTTAAAAAGGAAGCTCCCCCTCCCGTGTCTGCCTGTGTC
CAGCTCAGAAACTCCTGGACAGGGGCTGTGGGAGACATGGGCTCCAGAGC
AGAGTCCTCTGCCGCCCCAGGTAACTGAGGGCGTCCATTCCCGGCAGATC
ACAAGGAGTAACGAGAATAAATGGAAGCTTGGCCCGGTTTTAGGCCTTCC
GGAACCTGCGCGCGTGTGGGGCCCTTGTGAAATACCCCTCCCCGTAAGGT
CTTATGTAATAATAAAAAAGACAACCCCCCCATTCTCTTTTTTTTTTTAC
CCGCCCCTTTTTCTATTTATACCACATACTTTCATCTTTTTCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_k22.b1 MSMg01no417_k22.b1 CHROMAT_FILE:
MSMg01no417_k22.b1 PHD_FILE: MSMg01no417_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:38 2005
         (487 letters)



>mm_chr19_45481553_45482439
          Length = 887

 Score =  926 bits (479), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgtaaagttcctgatggtgttttacctttacagaataaactcactgggtatt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgtaaagttgctgatggtgttttacctttacagaataaactcactgggtatt 264

                                                                       
Query: 65  taaatgattataggtagaatatgccaccattcacgtgcagagtggccgtgtgagactagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaatgattataggtagaatatgccaccattcacgtgcagagtggccgtgtgagactagt 324

                                                                       
Query: 125 gttttgtattatgtagtgtgcacatatacacacatctaaatgtagatattgacatgatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttttgtattatgtagtgtgcacatatacacacatctaaatgtagatattgacatgatta 384

                                                                       
Query: 185 aaccattcgtttttctatttgtcttatctgtttttaaacttgcctttaatggattatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaccattcgtttttctatttgtcttatctgtttttaaacttgcctttaatggattatttt 444

                                                                       
Query: 245 ttggtattctgtttcttttgttctcatagtaggaattttgtcttaattttagaggttaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggtattctgtttcttttgttctcatagtaggaattttgtcttaattttagaggttaaa 504

                                                                       
Query: 305 gtatccttttttttttttttaaagacaaggtcttgctctgtagcccaggctagctttgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtatccttttttttttttttaaagacaaggtcttgctctgtagcccaggctagctttgaa 564

                                                                       
Query: 365 cctatccttccttctgcttcagttttctgactgtgtgagctataggtgtccatttccaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctatccttccttctgcttcagttttctgactgtgtgagctataggtgtccatttccaga 624

                                                                       
Query: 425 ccctgtaatatgcattttaaagtgttaatcatagttgaaattatatatccacaatctcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctgtaatatgcattttaaagtgttaatcatagttgaaattatatatccacaatctcta 684

              
Query: 485 att 487
           |||
Sbjct: 685 att 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_k22.g1 MSMg01no417_k22.g1 CHROMAT_FILE:
MSMg01no417_k22.g1 PHD_FILE: MSMg01no417_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:38 2005
         (444 letters)



>mm_chr19_45684138_45684981
          Length = 844

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggctacatggagaaactctgtcttgaaatagcaaaaacaaagcaaaac 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 caggacagccagggctacatggagaaactctgtcttgaaatagcaaaaacaaagcaaaac 654

                                                                       
Query: 61  aaaacaaaaaccaaaaaccataacatagccagtaaggaagctgaggctagtgagcagttg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaaccaaaaaccaaaaaccataacatagccagtaaggaagctgaggctagtgagcagttg 594

                                                                       
Query: 121 ctgtttcagcggtcatggccacagatgcgcaagtctgagcactggctttgggtccagagg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 ctgtttcagcggtcatggccacagatgtgcaagtctgagcactggctttgggtccagagg 534

                                                                       
Query: 181 tcatgctgttcgctgcggtcctacactgctcatggtcctgtctcatgctgaacactttca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgatgctgttcgctgcggtcctacactgctcatggtcctgtctcatgctgaacactttca 474

                                                                       
Query: 241 gttgggattagaactctttgactgtcttgaaattattttcaattttaaacaatgaatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gttgggattagaactctttgactgtcttgaaattattttcaattttaaacaatgaatctt 414

                                                                       
Query: 301 gacttgcttctttgacctgagcaagcctatttgaattttattttctgggaccctttagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gacttgcttctttgacctgagcaagcctatttgaattttattttctgggaccctttagcc 354

                                                                       
Query: 361 cggctcgacaaactcagactgtacctgcttaaaaaggaagctccccctcccgtgtctgcc 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cggctcggcaaactcagactgtacctgcttaaaaaggaagctccccctcccgtgtctgcc 294

                                   
Query: 421 tgtgtccagctcagaaactcctgg 444
           ||||||||||||||||||||||||
Sbjct: 293 tgtgtccagctcagaaactcctgg 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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