Query= MSMg01no417_l15.b1 MSMg01no417_l15.b1 CHROMAT_FILE:
MSMg01no417_l15.b1 PHD_FILE: MSMg01no417_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:42 2005
(516 letters)
>mm_chr19_5561078_5561990
Length = 913
Score = 951 bits (492), Expect = 0.0
Identities = 506/512 (98%), Gaps = 3/512 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttattacactaatttcctcacagtctgttccggcaaacatttaacactatgt 64
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattaatttatcagactaatttcctcacagtctgttccggcaaacatttaacactatgt 654
Query: 65 gagacaggtgtactgaagtctggagtctaaaaatgttagcagcctttaactgcaggttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gagacaggtgtactgaagtctggagtctaaaaatgttagcagcctttaactgcaggttcc 594
Query: 125 atccctgcctttaataggtcagccagtaaaagcaacccagcacggccaaagtgtcatagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atccctgcctttaataggtcagccagtaaaagcaacccagcacggccaaagtgtcatagt 534
Query: 185 gaagtggctcacacgaaggccacggaacactctcagttcaatgggggtggggcatagctc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ---gtggctcacacgaaggccacggaacactctcagttcaatgggggtggggcatagctc 477
Query: 245 caactaggcctgctgaagagtacagcagggtggagggggagctgcttgctgatctcccac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caactaggcctgctgaagagtacagcagggtggagggggagctgcttgctgatctcccac 417
Query: 305 ccagggaggacactggttgcaacaggcaagaggactgtgtcagatctcactcagctggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccagggaggacactggttgcaacaggcaagaggactgtgtcagatctcactcagctggag 357
Query: 365 tcattatcccagagcctcttccaggttttcagaatctgaaatccggctgtttatgaccag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcattatcccagagcctcttccaggttttcagaatctgaaatccggctgtttatgaccag 297
Query: 425 gagagtttgggcgaatacacccgcccatatgccaaggtgctggcctgggttaggttggac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gagagtttgggcgaatacacccgcccatatgccaaggtgctggcctgggttaggttggac 237
Query: 485 tcagggcagtttaatcgccctcgaaaccagaa 516
||||||||||||||||||||||||||||||||
Sbjct: 236 tcagggcagtttaatcgccctcgaaaccagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 913
Length adjustment: 10
Effective length of query: 506
Effective length of database: 903
Effective search space: 456918
Effective search space used: 456918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_l15.g1 MSMg01no417_l15.g1 CHROMAT_FILE:
MSMg01no417_l15.g1 PHD_FILE: MSMg01no417_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:42 2005
(484 letters)
>mm_chr19_5324035_5324918
Length = 884
Score = 928 bits (480), Expect = 0.0
Identities = 483/484 (99%)
Strand = Plus / Plus
Query: 1 ctgaaggagtgtgggatgttcatcacaccagctcactacagcgacattgtgaatgagcgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgaaggagtgtgggatgttcatcacaccagctcactacagcgacgttgtgaatgagcgg 260
Query: 61 tccatcatcgaactctgtggctatcctttatgtcagaaaacacaagaccacagccgcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatcatcgaactctgtggctatcctttatgtcagaaaacacaagaccacagccgcaca 320
Query: 121 caaaaagcagctaaggagaaagaaggttgctcagaacagaacgtggactccaaggcagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaagcagctaaggagaaagaaggttgctcagaacagaacgtggactccaaggcagga 380
Query: 181 gaacaaactgtgtcagaggttaccgaacagctggataattgcagatcagatagtcaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacaaactgtgtcagaggttaccgaacagctggataattgcagatcagatagtcaggag 440
Query: 241 aaagtggccacttgtaaacttcctttaaagaaagaaagtactcagatttcttcacctggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtggccacttgtaaacttcctttaaagaaagaaagtactcagatttcttcacctggc 500
Query: 301 cctttgtgtgacagatttaacaccagccatttctgaacataaacacggtgtatcacaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttgtgtgacagatttaacaccagccatttctgaacataaacacggtgtatcacaagt 560
Query: 361 tacacttgtaggtataagcaagaagagcgctgagcatttcagaagcaaatttgccaagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacacttgtaggtataagcaagaagagcgctgagcatttcagaagcaaatttgccaagtc 620
Query: 421 taggttctgggtcagcctctggtttggtacaggtgcgtcctgaggttgcgaaggcaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggttctgggtcagcctctggtttggtacaggtgcgtcctgaggttgcgaaggcaaact 680
Query: 481 tact 484
||||
Sbjct: 681 tact 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
