Query= MSMg01no418_j16.b1 MSMg01no418_j16.b1 CHROMAT_FILE:
MSMg01no418_j16.b1 PHD_FILE: MSMg01no418_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:51 2005
(589 letters)
>mm_chr19_51316339_51317329
Length = 991
Score = 1019 bits (527), Expect = 0.0
Identities = 579/602 (96%), Gaps = 13/602 (2%)
Strand = Plus / Plus
Query: 1 ggggtagcatggcccacaactggcttggctttccaatataatgacttattaagaaaatgt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 200 ggggtagcatggcccacaactggcttggctttccaatataatgactcattaagaaaatgt 259
Query: 61 cata-agacttgcctagagaatgatcttttgaagacattttctcaatcaaggttcccttc 119
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 catacagacttgcctagagaataatcttttgaagacattttctcaatcaaggttcccttc 319
Query: 120 tttcagatgagtatggcttgggacaagttgacataagactatctagcacagcagccacct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttcagatgagtatggcttgggacaagttgacataagactatctagcacagcagccacct 379
Query: 180 gtagctattagtcagggactagcaaaggaatgctgaagaaagagctcaaaatgaaaggca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtagctattagtcagggactagcaaaggaatgctgaagaaagagctcaaaatgaaaggca 439
Query: 240 ttataatgttaacatcgatagagcttgaaatgaaaaaaaa--ctgagttatagcatataa 297
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 ttataatgttaacatcgatagagcttgaaatgaaaaaaaaaactgagttatagcatataa 499
Query: 298 gtattcagtgttagttctatacctagctgaaattctcagacattcacagaatataaaaat 357
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 gtattcagtgttagttctatatctagctgaaattctcaggcattcacagaatataaaaat 559
Query: 358 attttttaagcacatggtaaagatatttactgtaagaatttgtataccattatgggttaa 417
|||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 560 atttttgaagcacatggtaaagatatttactataagaatttgcataccattatgggttaa 619
Query: 418 gaaatagtccctggggctggagatattgcttagtggttgaatctacttgtcatctcagga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaatagtccctggggctggagatattgcttagtggttgaatctacttgtcatctcagga 679
Query: 478 gatccaagttcagttatcaacatctacttttatctatcacaggttcacacatgtatgcag 537
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 gatccaagttcagttatcaacatctacttttatctaccacaggttcacacatgtatgcag 739
Query: 538 tacacacacacactcnc-c-------gagagagagagagagagagagaga--gagagaga 587
||||||||||||| | | | |||||||||||||||||||||||| ||||||||
Sbjct: 740 tacacacacacacacacacacacacagagagagagagagagagagagagacagagagaga 799
Query: 588 ca 589
||
Sbjct: 800 ca 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 991
Length adjustment: 10
Effective length of query: 579
Effective length of database: 981
Effective search space: 567999
Effective search space used: 567999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_j16.g1 MSMg01no418_j16.g1 CHROMAT_FILE:
MSMg01no418_j16.g1 PHD_FILE: MSMg01no418_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:51 2005
(428 letters)
>mm_chr19_51485420_51486248
Length = 829
Score = 752 bits (389), Expect = 0.0
Identities = 410/417 (98%), Gaps = 1/417 (0%)
Strand = Plus / Minus
Query: 13 caatattcacaaatctgggcaagctccgcccaaacaaaactccagcatgtggatgagacc 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 caatattcacaaatctgggcaagctccgcccaaacaaaactccagcatgtggatgagacc 770
Query: 73 atgaagatgaacatgtagtttccctcctccttgggagctattggcaattgatggtctctg 132
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 769 atgaagatgaacatgtagtttccctcctccttgggagctattggcatttgatggtctctg 710
Query: 133 aaagaggggtggattaatttcccttgaacttgtggcccatataggttgcagaatatactc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaagaggggtggattaatttcccttgaacttgtggcccatataggttgcagaatatactc 650
Query: 193 cagaagatgaccaacactcaggacagtctagtagtaagcattaattgatgtatattattt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 649 cagaagatgaccaacactcaggacagtctagtagtaagcattaattgatgtatatgagtt 590
Query: 253 ttgacaaaatgaggtaaaaaatttttgagagtgctcaatgagggagtagattttggagga 312
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttgacaaaatgaggtaaaaattttttgagagtgctcaatgagggagtagattttggagga 530
Query: 313 gttagggctggaaagcaaatatgagattcacaaagatagaaaacatccagctagtgcagc 372
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 529 gttagggctgggaagcaaatatgaaattcacaaagatagaaaacatccagctagtgcagc 470
Query: 373 taagagctcactttataactccaccctgacat-gggggggggggaggaacttcaatc 428
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 taagagctcactttataactccaccctgacatggggggggggggaggaacttcaatc 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space: 343580
Effective search space used: 343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
