Query= MSMg01no418_n24.b1 MSMg01no418_n24.b1 CHROMAT_FILE:
MSMg01no418_n24.b1 PHD_FILE: MSMg01no418_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:11 2005
(483 letters)
>mm_chr19_21926444_21927326
Length = 883
Score = 816 bits (422), Expect = 0.0
Identities = 465/480 (96%), Gaps = 4/480 (0%)
Strand = Plus / Plus
Query: 5 gaattccaccctcttggcgatgtttctgaaatggagatgacaccgtgcggccttttcgta 64
|||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgaccctcctggggatgtttctgaaatggagatgacaccgtgcggccttttcgta 264
Query: 65 tcctcaggtcaatggtacggactttaccttccggagtgcgggtgccctcctcctcgttgt 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 tcctcaggtcaatggtactgactttaccttccggagtgcgggtgccctcctcctcattgt 324
Query: 125 ggatgcctgcagtgtgcctttccgggtgaaggaaaagcggatgttcctttctgcagacgt 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggatgcctgcagtgtgcccttccgggtgaaggaaaagcggatgttcctttctgcagacgt 384
Query: 185 cagtcacatggaagaatatttcaaggctagcatccccccaaggtaggccaagcttgccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtcacatggaagaatatttcaaggctagcatccccccaaggtaggccaagcttgccct 444
Query: 245 gcaccagagaaaaactacctcaagatatgacttcttgctaccatggcacatgcttacttc 304
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 gcaccagagaagaactacctcaagatatgactccttgctaccatggcacatgcttacttc 504
Query: 305 tgagctctgcttactccatgagca-tcccaggctccctgagatatcccttcccacctcag 363
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 505 tgagctctgcttactccatgagcactcc-aggctccctgagatatcccttcccacctcag 563
Query: 364 gctaatccctgggccattggcagatcccggatgctagtttttttttttttaaaaagattt 423
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 564 gctgatccctgggccattggcagatcccggatgctagattttttttttttaaa--gattt 621
Query: 424 atttattttatgtatatgagtacattgtagctgtcttcagacacaccagaagagggcatc 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 622 atttattttatgtatatgagtacattgtaactgtcttcagacacaccagaagagggcatc 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_n24.g1 MSMg01no418_n24.g1 CHROMAT_FILE:
MSMg01no418_n24.g1 PHD_FILE: MSMg01no418_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:11 2005
(501 letters)
>mm_chr19_22111563_22112463
Length = 901
Score = 870 bits (450), Expect = 0.0
Identities = 477/486 (98%)
Strand = Plus / Minus
Query: 1 cacaaaaccccaaacaagaggccataatatatacacaaaggacttgtaagggaaaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 863 cacaaaaccccaaacaagaggccataatatatacacaaaggacttataaggggaaaaatg 804
Query: 61 ccctgacttcacattatgagacaaagaacctccaaaagatgctattgactgtgttttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccctgacttcacattatgagacaaagaacctccaaaagatgctattgactgtgttttctg 744
Query: 121 attctactcctgggcatgggacctgcccttaagagaggattgtttcccattgagactccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attctactcctgggcatgggacctgcccttaagagaggattgtttcccattgagactccc 684
Query: 181 ttggagaaaactaaattttcacttgcaagtggctatcaattagaactatcttctgggcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttggagaaaactaaattttcacttgcaagtggctatcaattagaactatcttctgggcta 624
Query: 241 gggatagtggtatgtgtccacttctctcagttctaagagaaaccccacctcacttcttga 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggatagtggcatgtgtccacttctctcagttctaagagaaaccccacctcacttcttga 564
Query: 301 agttgctctctttccatgtccagagctctgcctcagcatcaaggctcattccctgaataa 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acttgctctctttccatgtccagagctctgcctcagcatcaaggctcattccctgaataa 504
Query: 361 aagtatagaaactccaccactatccagaaagaaagaaagaaagaaagaaagaaagaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagtatagaaactccaccactatccagaaagaaagaaagaaagaaagaaagaaagaaaga 444
Query: 421 aagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg 480
||||||||||||||||||| ||| ||| ||| |||||||| |||||||||||||||||||
Sbjct: 443 aagaaagaaagaaagaaagaaagaaagaaagaaaggaagggaggaaggaaggaaggaagg 384
Query: 481 aaggaa 486
||||||
Sbjct: 383 aaggaa 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
