BAC Information

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BAC

Clone NameMSMg01-419A10
Chromosome19 (Build37)
Map Location 14,915,240 - 14,915,725
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
Downstream geneEG433225, EG635497, Pomc-ps1, LOC667482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419A10.T7 (MSMg01no419_a10.b1)MSMg01-419A10.TJ (MSMg01no419_a10.g1)
ACCAG514224AG514225
length718743
length of high quality
(start - end)
150 (333 - 482)497 (70 - 566)
definitionCHROMAT_FILE: MSMg01no419_a10.b1 PHD_FILE: MSMg01no419_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005CHROMAT_FILE: MSMg01no419_a10.g1 PHD_FILE: MSMg01no419_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGAAACTCTAAAATTGCGGGCGCTAAANGANNCACTAAATCGAAAACAG
GCGNGGAAANCCNCAAAATTCTATGAAAAGGTCNTCCNNAGACACGGGGC
ACAGNCTACTGAAGCTCCACTGTAGAGACGCTAGATATTTTTCTAGAACC
TCAGACCAAACATTTTATCAAGAGCAGTACCAAGATCAACCTTTTAGGGA
AAACATATTTAACCTTTGTGTAAACTAAAAGAGGACAGGCATGGGTAGCT
ATGGATTGTGGTAGGACATAAGGGAGGCAAGAAGAAAAAACCAGAACTTC
AAATGGGTTACCATATCAGCTCCATTTCCCCATGTGTTGTTTATTGGCAC
ATTTGATATGCATAGCTCTCTGCTGATCCCTTTTCTCTACAGTTCCCATA
ATGCTGTGAGCAGGAACTAGCAATAGCCTTTCAGAGTGAAAGAACTGAAG
CTTAAAGAAATTAAAGTGTCTTTCCCAGGGCCATTGGCAATGATGGGACT
GAAGAGTAAAGCTCTTAGCAATAGTTCCCTTCCCCTTTTCTCCTGCTGTA
TCACGCCTCTCCTGAGTCTGGCTCTGCCTCCAGTTCAGAAGCTGCACTAA
GTTGCATAGCTCCGCGCCCCTTCATATGGGAACCAACTTAACCCTCATGA
AGTGCTATTTTATGCCCATTACCCCCTAAGAACACCCAATAGTTAGGAAG
TACAATAAATGCACCCTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAAGTTGTTAGAGTTAAGAAGGATGAGGTA
AAGAGTTAAAAGTGGCATTCAGAGATGGCACATTGTTATTCTTGTTTTGG
TTAAATCTTATTGGACAGAGATCAATGGGTGGACACACAGGACTGGATGT
GCTATATCACCATTTTCGTAGGTCCACTGAAGAAGTTCATCTGTCCTTCA
CGTTTTAGGATATAAATTGCACCAGTTTTTTTTTTTTTTTAACCAAAACT
GTTCTGAGGGGACAGATTTTCTGTTCAAGCCTTGAACTGAAGTGTCAACA
CTGGAAGAACAAAGCCAAGATCACAGGACTCAGATATTGTCTCTCCTCCC
AGAACACCTCATATTACTACTATAATATATAATATAATATATATAATAAT
AACTGGGCAGAAGCCCTGGGAGCCTCTGTTTTAATAGAAATGTGAATTAG
GTTAAGCTGCAAGGTAACTGATATTGCCTAGCTCTGTTCCTTACATCATT
CTGCTCTCTAAATCAGACAACACTGGATTTTGTCTAAGGCTGTGAACTAA
ATCAGGGGAGAGACAGAATAGCACAGGCACTTCTCCTGCCTGGTGACTGC
TCTTCACTGTTTTCCAAAGGTTCAGACTTGGAGGCCTTTGTTTGCTACCC
CGCCTTTGGGTCTAATAGTTTAACCCCACATTTTTTCTTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_a10.g1 MSMg01no419_a10.g1 CHROMAT_FILE:
MSMg01no419_a10.g1 PHD_FILE: MSMg01no419_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:24 2005
         (497 letters)



>mm_chr19_14915040_14915936
          Length = 897

 Score =  785 bits (406), Expect = 0.0
 Identities = 470/498 (94%), Gaps = 13/498 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagttgttagagttaagaaggatgaggtaaagagttaaaagtggcattcagagatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagttgttagagttaagaaggatgaggtaaagagttaaaagtggcattcagagatggc 260

                                                                       
Query: 61  acattgttattcttgttttggttaaatcttattggacagagatcaatgggtggacacaca 120
           |||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||
Sbjct: 261 acattgttattcttgttttggttaaatcttattgcacagaggtcaatggatgggcacaca 320

                                                                       
Query: 121 ggactggatgtgctatatcacca-ttttcgtaggtccactgaagaagttcatctgtcctt 179
           || |||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct: 321 gggctggatgtgctatatcaccagtttt-gtaggtccactgaagatgttcatctgtcctt 379

                                                                       
Query: 180 cacgttttaggatataaattgcaccagtttttttttttttttaaccaaaactgttctgag 239
            | |||||||||||||||||||||||||||||           ||| ||||| |||||||
Sbjct: 380 aatgttttaggatataaattgcaccagttttt-----------acccaaactcttctgag 428

                                                                       
Query: 240 gggacagattttctgttcaagccttgaactgaagtgtcaacactggaagaacaaagccaa 299
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gggacagaaaatctgttcaagccttgaactgaagtgtcaacactggaagaacaaagccaa 488

                                                                       
Query: 300 gatcacaggactcagatattgtctctcctcccagaacacctcatattactactataatat 359
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 489 gatcacaggactcagatattgtctctcctaccagaacacctcatattactactataatat 548

                                                                       
Query: 360 ataatataatatatataataataactgggcagaagccctgggagcctctgttttaataga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ataatataatatatataataataactgggcagaagccctgggagcctctgttttaataga 608

                                                                       
Query: 420 aatgtgaattaggttaagctgcaaggtaactgatattgcctagctctgttccttacatca 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aatgtgaattaggttaagctgaaaggtaactgatattgcctagctctgttccttacatca 668

                             
Query: 480 ttctgctctctaaatcag 497
           ||||||||||||||||||
Sbjct: 669 ttctgctctctaaatcag 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)