BAC Information

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BAC

Clone NameMSMg01-419C06
Chromosome19 (Build37)
Map Location 15,111,469 - 15,111,763
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225
Downstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419C06.T7 (MSMg01no419_c06.b1)MSMg01-419C06.TJ (MSMg01no419_c06.g1)
ACCAG514312AG514313
length764714
length of high quality
(start - end)
296 (170 - 465)---
definitionCHROMAT_FILE: MSMg01no419_c06.b1 PHD_FILE: MSMg01no419_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:33 2005CHROMAT_FILE: MSMg01no419_c06.g1 PHD_FILE: MSMg01no419_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTTTCTAAATTTGTGGCGCGTAAAGATNACTAATTCCAAAGGACCGC
NGGAATCCCAAATTTCCCGAAAGCTTCTTCCTTAGCCACTGGGCACAGTC
TACTGAAGCTCCACTGAAGAGATGCTAGATATTTTTCCAGAACCTCAGAA
CAAACATTTTATCAAGAGCAGTACCAAGATCAACCTTTTAGGGAAAACAT
ATTTAACCTTTGTGTAAACTAAAAGAGGACAGTCATGGTTAGCTATGTAT
TGTGCAAGGACATAAGGCAGTCAAGATGATAAAACCAGAACTTCAAATGG
GTTACCATATCAGCTCTATTTCTCTCATGTGTTGTTTATTGGCACATTTG
ATATGCAAAGCTCTCTGCTGATCCCTTTTCTCTACAGTTCCCATAATGCT
GTGAGCAGGAACTAGCAATAGCCTTTCAGAGTGAAAGAACTGAAGTTTAA
AGAAATTAAAGTGTCTTTCCCAGGGCCATTGGTAATGATGGGACTGAAGA
GTACAGCTCTTACCATAAGTTCCTTCCCCCTTTCTCCGGCTGGTATACGG
CCCCTCCTGAGGCTGGGTTCTGCCCTCCGGTTAAAAGCTGCCTTAAGTTG
TCAAGCTTCCGGGCCCTTCCTATTGGGACCCAATTTAAACCCCCCTGGAA
TGGGTTCTTGGGCCCAATTATTTCCCTTTATATCCCCCACAAATTTGCTA
GGTCCAAAAAACGGTTTTGGGGTTCTCCCCTTCAAAAACGAAAGTTTGAA
TCCCCCGCCTCCCC
CTAGGGGAGGCCTGGCGGCGCCTGGTTTCGAATCGAGGNGAACNATAGAA
GGTTACGAAACTCACNAAGAGGAAANTAAAAGGAGGAGAAAAGAGGTAAA
AGGGTCTCCAGAACGGCCAACGAATACAAGANNCCGGTAAATCTTATTGA
ACCGAGATCTCGTTTGGACACACGGACTGGATGGGCCAATCACCATTTAC
ATACGCCCCCAGAATAAGTCATCTGACCTTCTTTTTTTACGATATAAATT
GCGCCAGTTCTATATTCTTTCTAACCTATTATGATCGGAGCATGCATATT
TATGTTTTGAACCAAGAACAGAACNGNCGACACAGGGAAATTACTACCCC
TACGCAGGACTGCAATAGTGCCTCGACACCAATAACCCCGCTTACCACAA
CTATAATAGATCATAGAGTATATTGAACACTAACTGTTTCTAAGACCAGG
AACACACCGTATCAAGAGAAATGAGAATCAGAGTAATCGGCAAGATATCT
GATATGAGCCTAGCTGAGTCCCAGACCCCAGTCTGCTCGCCAGATCATAC
AGCTCTGAATTAATATCTAGAGCGGTGACCCAGCACTTTTGAGAGAGCTG
ACGTTCCATGCTAATCGCCAGCCTGAAGACAGCCCTTGTTTTTTTTTTGT
AGATCAAACATGAAAGACCTGGCAGTAACCCCCACTTATGTTATAACAGC
TATATCCCTCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_c06.b1 MSMg01no419_c06.b1 CHROMAT_FILE:
MSMg01no419_c06.b1 PHD_FILE: MSMg01no419_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:33 2005
         (296 letters)



>mm_chr19_15111269_15111963
          Length = 695

 Score =  542 bits (280), Expect = e-158
 Identities = 292/296 (98%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaccaagatcaaccttttagggaaaacatatttaacctttgtgtaaactaaaagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agtaccaagatcaaccttttagggaaaacatatttaacctttgtgtaaactaaaagagga 436

                                                                       
Query: 61  cagtcatggttagctatgtattgtgcaaggacataaggcagtcaagatgataaaaccaga 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 435 cagtcatggttagctatgtattgtgcaaggacataaagcagtcaagatgataaaaccaga 376

                                                                       
Query: 121 acttcaaatgggttaccatatcagctctatttctctcatgtgttgtttattggcacattt 180
           ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct: 375 acttcaaatgggttaccatatcagctctatttc-cccatgtgctgtttattggcacattt 317

                                                                       
Query: 181 gatatgcaaagctctctgctgatcccttttctctacagttcccataatgctgtgagcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatatgcaaagctctctgctgatcccttttctctacagttcccataatgctgtgagcagg 257

                                                                   
Query: 241 aactagcaatagcctttcagagtgaaagaactgaagtttaaagaaattaaagtgtc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aactagcaatagcctttcagagtgaaagaactgaagtttaaagaaattaaagtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)