Query= MSMg01no419_k15.b1 MSMg01no419_k15.b1 CHROMAT_FILE:
MSMg01no419_k15.b1 PHD_FILE: MSMg01no419_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:16 2005
(269 letters)
>mm_chr19_18152288_18152956
Length = 669
Score = 514 bits (266), Expect = e-150
Identities = 269/270 (99%), Gaps = 1/270 (0%)
Strand = Plus / Plus
Query: 1 agatggattcagattaaaagttgtttttcccacttcaagtgatttaattaagagaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agatggattcagattaaaagttgtttttcccacttcaagtgatttaattaagagaaaaaa 259
Query: 61 aa-ttcctctcacacgtatactcagccacttggactttagtttattccagatgtagtcaa 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaattcctctcacacgtatactcagccacttggactttagtttattccagatgtagtcaa 319
Query: 120 gttgacaaccaagagtaggtatcatagtgctgatccattgtttgcaatattagccatagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttgacaaccaagagtaggtatcatagtgctgatccattgtttgcaatattagccatagc 379
Query: 180 tggagatacacaaaaccaaaacactgagtaaacctcattcaggaatttaattaaggctcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggagatacacaaaaccaaaacactgagtaaacctcattcaggaatttaattaaggctcc 439
Query: 240 attagatcatattcctatgtctactgatgc 269
||||||||||||||||||||||||||||||
Sbjct: 440 attagatcatattcctatgtctactgatgc 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_k15.g1 MSMg01no419_k15.g1 CHROMAT_FILE:
MSMg01no419_k15.g1 PHD_FILE: MSMg01no419_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:16 2005
(462 letters)
>mm_chr19_18329894_18330755
Length = 862
Score = 862 bits (446), Expect = 0.0
Identities = 458/462 (99%)
Strand = Plus / Minus
Query: 1 caatagaagaataagagtgaagagcgatttgtctgcaacagaacatttgatccattgtga 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 662 caatagaagaataagagtgaagagcgatttgtctgcaacagaacatgtgatccattgtga 603
Query: 61 cttgagagtattcggaagtaacaagttcactgccttttgtgtcctaaaagctcaagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cttgagagtattcggaagtaacaagttcactgccttttgtgtcctaaaagctcaagaaag 543
Query: 121 tgtcctgattattgggcattctgattagtctgcattcttaattagttttcctttctggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgtcctgattattgggcattctgattagtctgcattcttaattagttttcctttctggtg 483
Query: 181 ataaaatagatacggtaaacaacttaaaaggagggagagttggtttgtgttcacgttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ataaaatagatacggtaaacaacttaaaaggagggagagttggtttgtgttcacgttttc 423
Query: 241 aaaggtttttgttcagggttgtttggcttggtcaggacacacttgtagtggggcctcaga 300
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 422 aaaggtttttggtcagggttgtttggcttggtcaggatgcacttgtagtggggcctcaga 363
Query: 301 gagcatcacggcagggggtgatcagtgaagcaaagctgctcacacaaaggagtccaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagcatcacggcagggggtgatcagtgaagcaaagctgctcacacaaaggagtccaaaaa 303
Query: 361 gcatcatccagggtcccttttgctttgccctcccacactttgataagagattgcacactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcatcatccagggtcccttttgctttgccctcccacactttgataagagattgcacactt 243
Query: 421 ctaaccacaacagcctatgggctgcttgttctccctgttgcg 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctaaccacaacagcctatgggctgcttgttctccctgttgcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
