Query= MSMg01no421_h20.b1 MSMg01no421_h20.b1 CHROMAT_FILE:
MSMg01no421_h20.b1 PHD_FILE: MSMg01no421_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:41 2005
(454 letters)
>mm_chr19_47931088_47931941
Length = 854
Score = 801 bits (414), Expect = 0.0
Identities = 443/454 (97%), Gaps = 3/454 (0%)
Strand = Plus / Plus
Query: 1 ttgttgtgggtgaagacccgggaaatcagacgtgttgggatggcttacttttgagtggtc 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttgtgggtgaagacccgggaagtcagacgtgttgggatggcttacttttgagtggtc 260
Query: 61 tctcctagtggacactgtgcctgatttgagttcttcggacatcgctttaaggattagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcctagtggacactgtgcctgatttgagttcttcggacatcgctttaaggattagaat 320
Query: 121 gctttcctgtctcctacagtctctgcaggatacaaggtatacgcagttacaatctgcatt 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gctttcctgtctcctacagtctctgcaggatacaaggcatacgcagttacaatctgcatt 380
Query: 181 tatccggactccagtggattctttcttttttaaatttattttgtatactttttaaaaatt 240
|| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 381 tagccggactccaatggattctttctttttttaatttactttgtatactttttaaaaatt 440
Query: 241 atttttatgtttatgtgtgtgcacctgtgcatgagtttatgtgcttgcgggatgccacag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttatgttcatgtgtgtgcacctgtgcatgagtttatgtgcttgcgggatgccacag 500
Query: 301 agcaaaagagggcattgggtccccagaaactggagttatgacctctgacgtgggtcctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaaaagagggcattgggtccccagaaactggagttatgacctctgacgtgggtcctgg 560
Query: 361 gaactgaacccaatcctctgcaagagcagcaagtgcccttagactgtctgtccagtctca 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 gaactgaacccaatcctctgcaagagca---agtgcccttagactgtctgtccagtctca 617
Query: 421 tactttttatgatttagaatcctttttaaagaaa 454
||||||||||||||||||| ||||||||||||||
Sbjct: 618 tactttttatgatttagaaacctttttaaagaaa 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_h20.g1 MSMg01no421_h20.g1 CHROMAT_FILE:
MSMg01no421_h20.g1 PHD_FILE: MSMg01no421_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:41 2005
(477 letters)
>mm_chr19_48101266_48102147
Length = 882
Score = 864 bits (447), Expect = 0.0
Identities = 471/481 (97%), Gaps = 5/481 (1%)
Strand = Plus / Minus
Query: 1 catggacatgtgtgtgagcagaaaacatctctggtattcttagtgactgctcactcgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catggacatgtgtgtgagcagaaaacatctctggtattcttagtgactgctcactcgctc 622
Query: 61 acaagataaagctaaaaggacagattgaagatgcgcagttttttgagacaacttccaaga 120
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct: 621 acaagataaagctaaaaggacagattgaagaagcacagtttttggagacaacttccaaga 562
Query: 121 agtgcacagaataataaaatactccatgtctccaactgaggcttttgtgtcactgggaag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgcacagaataataaaatactccatgtctccaactgaggcttttgtgtcactgggaag 502
Query: 181 ggaattgtg----cccccccca-aaaaaattctttttgcatggttgtatctcccttttgt 235
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaattgtgccccccccccccacaaaaaattctttttgcatggttgtatctcccttttgt 442
Query: 236 ggctatttatgtgataaatgggcatgaagcaagaccctgagcaccggttggtgctttgca 295
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ggctatttatgtgataaatgggcatgaagcaagaccctgagcaccggctggtgctttgca 382
Query: 296 aatgtttactgtgggtggaaaggaatagcaggaagctgcctcggtgtggtaatggacttt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtttactgtgggtggaaaggaatagcaggaagctgcctcggtgtggtaatggacttt 322
Query: 356 ggtttggcaatggtgtttaatgttctcttctaccatctgggctgtctgaaccatcctgtg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttggcaatggtgtttaatgttctcttctaccatctgggctgtctgaaccatcctgtg 262
Query: 416 accttccatgcaagcccttcctccattacatcacttccttccttcctcattcatttcttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttccatgcaagcccttcctccattacatcacttccttccttcctcattcatttcttg 202
Query: 476 g 476
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 882
Length adjustment: 10
Effective length of query: 467
Effective length of database: 872
Effective search space: 407224
Effective search space used: 407224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
