BAC Information

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BAC

Clone NameMSMg01-421O24
Chromosome19 (Build37)
Map Location 11,861,870 - 11,862,122
singlet/doubletsinglet
Overlap geneStx3
Upstream geneCd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16
Downstream geneOlfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421O24.T7 (MSMg01no421_o24.b1)MSMg01-421O24.TJ (MSMg01no421_o24.g1)
ACCAG516447AG516448
length747860
length of high quality
(start - end)
249 (86 - 334)---
definitionCHROMAT_FILE: MSMg01no421_o24.b1 PHD_FILE: MSMg01no421_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:16 2005CHROMAT_FILE: MSMg01no421_o24.g1 PHD_FILE: MSMg01no421_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGTCTGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
CAAACAGCGNGGAATTCATCCCAATGTTGCCACCAACACCATTTTCTGCT
GCTGCCAACACACACACACACACACACACACACTCACCCACACACACACA
CACACACTCCTAATCACATTTCTTATTTCTCTCAAAAAAGTAAGCTCTGC
CTCCTGAACCTTTCTACACTGGTACTCCTGCTTACCCGAGGCCACCGCCA
ATTCACTATGAGATCTTTCTATGGTGTGATGACCATGGATTCGATTATGC
CTGCTTACATTGCTTTTCTGCTATACAATATTTATTGCTCTTCTCAAACA
TCATGTGAGATTCCCCCCTCCTTTTTTTCCTATCCCGTTTTTGTTTTTTA
ATGTTCTCACACTATAGCTCAAGCAGGGTAGCCTTGAAGTCTCGGCAGTC
CTCTTGCCTCTGACTCCAAAGTGTTGGGATTATGTGAGGCAGCCACCATG
GCCAAGTTCTCATAAGACAAGGATCATGTTTTTGATGGCTCCAAAGTGCC
TGAATCCAAACTGGGTGAATATAAATAAAAATCCCTTAAAAGACATAAAC
AGGTTTCTTGAACTTATAAAAAAAAGGCAGTGTTTAAAGGTGCATTTCTT
AAAAATCATAGGGAAAAACTTCAGGTTTTTTTTTTTTTTATAATAAAAAA
AAGTCCCCAAGTAAAATATATGGTCCTTTGGCCAATTGTCTTCACAC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGCTGCTGTAGACAAACT
GAACTNCTGAATCTCTGGCCCCCACTCCAAGTGCTAGGAGTGCCAGTTTT
AGGCAGACTGGGGGACCAACCCAGGGATTCTGGATGCTAACCTGGCAGAA
ACCCAAATTTTGGGTAAACAAGTGGACCACCCCAACGCATTTTAAAAAAC
CTTTTTCCCAGGGGGAAAGGAAAAACCCCCCGGGGGCCCCGGGTGGGTCT
CTTTCAATATGGGGAAAAGGNGGGCCTTTTTTGGGGGGGGACACCCTGGG
GAGAACAGCCCACCCAAAGGGGGGGGTGGGTCACCCCCCCCAAAAAAANN
NAAACCTCCTCTTAAAACNCTCCTTTATATATTTTTGTCCCTCAAAGGAG
AGGGAGGGAGCGGCCTCTTTTTCTTTTTCCCNNNNNNNNNNTNTTCCTTT
CAAAAAAAAAAAAAAAAAGCCTATTTTTTTTTATGGTGGGGGGGGAAAAA
AAAAAAATATGGGTGTGGTGGGCACCCCCCCCTCTCTCTTTTTNTTTCAT
AACACCANNNNCCCAACCCGTCCCCAAGATNAAAAAAAATNNNNTAAAAT
CTTCTCTCTTCTCTCTATNCNCAATGAATAGATACAGNNNNCNGTCCCAC
GTAAAAATAACAAAACTTTTAATCTGTCGTTGTGTTNNTNTTTTCATATA
TATAGATTAAAACACACTCTATATATTTTAATNTTCTTATTTTGGGNCCC
CTTTGATAGCCCNCNACCTCCTTCTCAAGACAAAGAAGCCNTCCCCTCTT
ANCTTAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_o24.b1 MSMg01no421_o24.b1 CHROMAT_FILE:
MSMg01no421_o24.b1 PHD_FILE: MSMg01no421_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:16 2005
         (249 letters)



>mm_chr19_11861674_11862322
          Length = 649

 Score =  315 bits (163), Expect = 1e-90
 Identities = 228/259 (88%), Gaps = 16/259 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaccattttctgctgctgccaacacacacacacacacacacacacactcacccacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||
Sbjct: 197 acaccattttctgctgctgccaacacacacacacacacacacacacac------acacac 250

                                                                       
Query: 61  acacacacacactc----------ctaatcacatttcttatttctctcaaaaaagtaagc 110
           || | | | | |||          ||||||||||||||||||||||||||||||| ||||
Sbjct: 251 actctctctctctctctctctctcctaatcacatttcttatttctctcaaaaaagaaagc 310

                                                                       
Query: 111 tctgcctcctgaacctttctacactggtactcctgcttacccgaggccaccgccaattca 170
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 tctgcctcctgagcctttctacactggtactcctgcttacccaaggccaccgccaattca 370

                                                                       
Query: 171 ctatgagatctttctatggtgtgatgaccatggattcgattatgcctgcttacattgctt 230
           | ||||||||| || |||||||| ||||| ||||||||||||||||| |||||| |||||
Sbjct: 371 ccatgagatctctcaatggtgtgctgaccctggattcgattatgccttcttacaatgctt 430

                              
Query: 231 ttctgctatacaatattta 249
           |||||||||||||||||||
Sbjct: 431 ttctgctatacaatattta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)