BAC Information

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BAC

Clone NameMSMg01-423A20
Chromosome19 (Build37)
Map Location 59,364,452 - 59,527,418
singlet/doubletdoublet
Overlap geneSlc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18
Downstream geneEmx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423A20.T7 (MSMg01no423_a20.b1)MSMg01-423A20.TJ (MSMg01no423_a20.g1)
ACCAG517298AG517299
length761758
length of high quality
(start - end)		494 (30 - 523)564 (59 - 622)
definitionCHROMAT_FILE: MSMg01no423_a20.b1 PHD_FILE: MSMg01no423_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:38 2005CHROMAT_FILE: MSMg01no423_a20.g1 PHD_FILE: MSMg01no423_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,364,452 - 59,364,941)(59,526,925 - 59,527,418)
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCATTGAGT
CATTCCTGGTGACAGGGTTCTCGTGCTGCTGTGTGAAGGAGAGTGGCCTA
TGTTTTCTGGAGTATGAGTCACAGCTGGTAGTGAACTGCTGGTGACCTGT
GCAATAAGTCATGGCTGCCTGTGAACTGCGTGTGAGCACTACAGCTTTCC
TTCCAGTCAGGTTTCTTTTTAAAATAATGTTACTGAGAGAGGCAAAGGAA
ACATTTTTAGTGGAAGGCATATCGACACTACCATTTGAGGAGCAATGCTC
CCTAAGACAATGACATAGCTAGCACCCTGGCCTCTCAAAACTCCCAGGTG
AGAACACAAGAATTCTAAGATAGGTTTTGCTTTTTAAAGGTTTAAATAAT
TAATTTTTTTTTAAAGCTAGGGCATGCCTTTTGGTCTTATTCTTTAAGTT
TCTGTTGCCAAGGAAGGAAAGGAGGTGATCTGTGGATAGCAGACTCCTGT
AAATGTGGCTATATAAAGTCCTTCTAGCTTAGACTCCAGTTCAGCGATAA
GTCAATAGAAAAAAGTACTTGCCTCAGGAAGATGCATGTTCAGATGCCCA
GCAACCATGTAAAGGTCAAGCAGGTGTGGTTCTCCTCCTATAATCTCTCC
CAGGGAGGGAAAAAAACAGGATTCCCGCCCTAATATGGGTGGCCTACCTA
CCCAAATGCTAATTCTTGGATCCATGTGAAACCCCTCCTCATATATTAAC
ATTGGTTCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCATACTTTTCTAGGGTAAAGAACTGGACCTAGAAAGGAAGGG
GTAAAGCCATCTGAGGAAAAAGAGAAATGCCAGGCTTTTTCTTTTGGACT
CTCCTTGAAAGCTGGGGAGGATGCCAGGAAGACTTGGGAAACACTATTAG
CTCCTGTCCTGTGTGGAACTTGGCTTTAAGCAGGTCCTTTCACACCCACG
AGTCAGCGAACTTTTCAAAGTGTGGCGAATGGTAAGATGCCCATTTTCCA
GGTGAGAAGGCTGAAGGTCAGAGAAGTTGTACACTGTGCCACTTTGCAGT
GATTAGATCATGAGGAACCCTGGACAGCCCAAGCTACTTCTCACCCAGCC
TCCAGAGATCACACTCCAGCCAACACAAAAGGTCAGCAAAGAGTCCCCAC
CCTCAGATGGGTCACCCAAACTGACCCAAGCCACAGGGCCTATTCATGCA
TCTTGCTTCTTGTAATCCTAGCGCTTGATGGTTTGCACCAACTGTCCTGA
AAGCCACATTCCCAACCCTGAGCTAGCAAAGCCTGCGAGTTAGGAGTCAA
GGATGTGAGTGAGAGCTTTCTCACAGCTCAGGAGGAAGCCCTTTTATCTG
TGTGGGTCCCCCGCGTCTTTCCCGTTAGAGATTCAAAGGGGGCTTTGAAA
ATCCTCTAGTGGGCGAAAGAAAACCTGATGCAATAAGCAGAAAGGAAACG
GGTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_a20.b1 MSMg01no423_a20.b1 CHROMAT_FILE:
MSMg01no423_a20.b1 PHD_FILE: MSMg01no423_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:38 2005
         (494 letters)



>mm_chr19_59364248_59365141
          Length = 894

 Score =  924 bits (478), Expect = 0.0
 Identities = 487/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcattgagtcattcctggtgacagggttctcgtgctgctgtgtgaaggagag 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 205 gaattctttcattgagtcattcctggtgacagggttctcatgctgctgtgtaaaggagag 264

                                                                       
Query: 65  tggcctatgttttctggagtatgagtcacagctggtagtgaactgctggtgacctgtgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggcctatgttttctggagtatgagtcacagctggtagtgaactgctggtgacctgtgca 324

                                                                       
Query: 125 ataagtcatggctgcctgtgaactgcgtgtgagcactacagctttccttccagtcaggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataagtcatggctgcctgtgaactgcgtgtgagcactacagctttccttccagtcaggtt 384

                                                                       
Query: 185 tctttttaaaataatgttactgagagaggcaaaggaaacatttttagtggaaggcatatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctttttaaaataatgttactgagagaggcaaaggaaacatttttagtggaaggcatatc 444

                                                                       
Query: 245 gacactaccatttgaggagcaatgctccctaagacaatgacatagctagcaccctggcct 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 gacactaccatttgaggagcaatgctccctaaaacaatgacatagctagcaccctggcct 504

                                                                       
Query: 305 ctcaaaactcccaggtgagaacacaagaattctaagataggttttgctttttaaaggttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcaaaactcccaggtgagaacacaagaattctaagataggttttgctttttaaaggttt 564

                                                                       
Query: 365 aaataattaatttttttttaaagctagggcatgccttttggtcttattctttaagtttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaataattaatttttttttaaagctagggcatgccttttggtcttattctttaagtttct 624

                                                                       
Query: 425 gttgccaaggaaggaaaggaggtgatctgtggatagcagactcctgtaaatgtggctata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttgccaaggaaggaaaggaggtgatctgtggatagcagactcctgtaaatgtggctata 684

                     
Query: 485 taaagtcctt 494
           ||||||||||
Sbjct: 685 taaagtcctt 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no423_a20.g1 MSMg01no423_a20.g1 CHROMAT_FILE:
MSMg01no423_a20.g1 PHD_FILE: MSMg01no423_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:38 2005
         (564 letters)



>mm_chr19_59526455_59527418
          Length = 964

 Score =  948 bits (490), Expect = 0.0
 Identities = 493/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 71  gccaggctttttcttttggactctccttgaaagctggggaggatgccaggaagacttggg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gccaggctttttcttttggactctccttgaaagctggggaggatgccaggaagacttggg 905

                                                                       
Query: 131 aaacactattagctcctgtcctgtgtggaacttggctttaagcaggtcctttcacaccca 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 aaacactattagctcctgtcctgtgtggaacttggctttaagcaggtcctttcacaccca 845

                                                                       
Query: 191 cgagtcagcgaacttttcaaagtgtggcgaatggtaagatgcccattttccaggtgagaa 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cgagtcagcgaacttttcaaagtgtggcgaatggtaagatgcccattttccaggtgagaa 785

                                                                       
Query: 251 ggctgaaggtcagagaagttgtacactgtgccactttgcagtgattagatcatgaggaac 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ggctgaaggtcagagaagttgtacactgtgccactttgcagtgattagatcatgaggaac 725

                                                                       
Query: 311 cctggacagcccaagctacttctcacccagcctccagagatcacactccagccaacacaa 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cctggacagcccaagctacttctcacccagcctccagagatcacactccagccaacacaa 665

                                                                       
Query: 371 aaggtcagcaaagagtccccaccctcagatgggtcacccaaactgacccaagccacaggg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aaggtcagcaaagagtccccaccctcagatgggtcacccaaactgacccaagccacaggg 605

                                                                       
Query: 431 cctattcatgcatcttgcttcttgtaatcctagcgcttgatggtttgcaccaactgtcct 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cctattcatgcatcttgcttcttgtaatcctagcgcttgatggtttgcaccaactgtcct 545

                                                                       
Query: 491 gaaagccacattcccaaccctgagctagcaaagcctgcgagttaggagtcaaggatgtga 550
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 544 gaaagccacattcccaaccctgagctagcaaagcctgggagttaggagtcaaggatgtga 485

                         
Query: 551 gtgagagctttctc 564
           ||||||||||||||
Sbjct: 484 gtgagagctttctc 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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