BAC Information

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BAC

Clone NameMSMg01-423B18
Chromosome19 (Build37)
Map Location 60,983,963 - 61,145,730
singlet/doubletdoublet
Overlap geneGprk5, LOC671322
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3
Downstream geneBC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B18.T7 (MSMg01no423_b18.b1)MSMg01-423B18.TJ (MSMg01no423_b18.g1)
ACCAG517342AG517343
length819752
length of high quality
(start - end)		154 (55 - 208)493 (62 - 554)
definitionCHROMAT_FILE: MSMg01no423_b18.b1 PHD_FILE: MSMg01no423_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:42 2005CHROMAT_FILE: MSMg01no423_b18.g1 PHD_FILE: MSMg01no423_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,145,577 - 61,145,730)(60,983,963 - 60,984,455)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCTTCC
CATACAGAGTTTGATGTACAAAGCCATTCATTCTTTGGGGAAGGTTGCAA
AAAAACATAGGACTATGGGCTAGGTATACAGTCAGCATAGATTTAGAAGG
TGTAGTCTGTGATCTCAGAACAGGAGGGGAGAAAGGGGGAAGGAGGGAAG
GAGACAGGGACAGATACATCTGGTTTGCGCCCTCTCTTCTCGTTTGCCCT
GTTTGTTTTTCTTTTCCCCTTCTTCCCCGCCGCTGCCCCCTTCTTCACTC
CTTCTTTTTTTTGCCGGTGAAGATCCCCTGTCGTCCCGTTTTCCTTTTTT
TCCTCCCTTTTCTCCCCCCTGTTCCGCTCTCTTTTCCCTCCTATCACCAG
CCCCTCTCCCGCCCTATCGTCGCGTTCCTTTTCCTTTTCCCCCCCTTTCG
TCTCCCCTTCTCCCTTTCTCTTTGTCTTCGCTTTCTCTACCACTCCTTAC
TTTCCCTTTCCTTTTTCCTCTTTTAACCTTCCCCTTTCCCTTCCTTTTTC
CCCCTCCTTCTTTTGTTTTCCTTCTCCCCTCCCCCTTTTATTTCCTCTTT
CCTTTCCCTTTCTTCTCTGTTCCCTTCCTTATTTTCTCCCGCCTTTTTTT
TTCTTACTTCTTTATTTTCTCGGCGTTATACTTTCTTTTTCCTTTCCTCT
CTCCGTTCTTTCCCCTTTTTTCCCTTCCCCTCCCTCCCGCCCCTTCCTTT
CGCCCCTTGTCTCCCCCCTCCCCCCTTATTTTTGATTTCTCCTTTCCTCT
CTTTTTCCCTTCCCTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCACCTGAGGAATACTGAATGGCCGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAACGCAAATCAAAACAACCCT
GATGTGCTTATAGCTCTTGTGTGGTGGAAACTACACTTTCTCTCAGCAGA
ATATTCAGAGCCCCTGGATTTAAAAAACAAAACAAAACAATGCTTTACCT
AGAAAATTGCAAAAATTTCCTGAAGGATGGAACTGAGACCTTAAAAACAC
ACACACACTGTGTGTGTGTATCTATCCATTCACCCTTTGGCCTTACTAGG
TACTAAAAATATTCCAGGTCTGCCCATGAAGGCCAGTTATACCAGGCATA
CCATCAACCATTAGGTTTGATTCTGTTCTTTTGAGACATAGCAGGTGGTA
CTCTGCCCTTTGCTGAGGGTACTTCCTAAGATCAGACACCTATCATGTCT
GCTGCAGGGAAGACTGTATTAATTACTTGTTGTTATGACAAAACATCTGA
TAGAAGCAATGTAAAGGAAGGAAGAAGTCTTTATTTTGCTTCAGGGTTTG
ACTCACGTTTTAATTTGTCTTGATGGGGAAGTTGTAATCTTGTCGGCAGA
AAAGTGGGTCTGGGAATCCTTCCATCTTTCTGAACGGGGAAGTATAACAC
AGCACGCTAGCACTTTTTCGGTTGCTCCCTTCTCTTTATGGGACCCCCCC
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b18.b1 MSMg01no423_b18.b1 CHROMAT_FILE:
MSMg01no423_b18.b1 PHD_FILE: MSMg01no423_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:42 2005
         (154 letters)



>mm_chr19_61145377_61145930
          Length = 554

 Score =  298 bits (154), Expect = 1e-85
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagtttgatgtacaaagccattcattctttggggaaggttgcaaaaaaacataggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagagtttgatgtacaaagccattcattctttggggaaggttgcaaaaaaacataggact 295

                                                                       
Query: 61  atgggctaggtatacagtcagcatagatttagaaggtgtagtctgtgatctcagaacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgggctaggtatacagtcagcatagatttagaaggtgtagtctgtgatctcagaacagg 235

                                             
Query: 121 aggggagaaagggggaaggagggaaggagacagg 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 aggggagaaagggggaaggagggaaggagacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no423_b18.g1 MSMg01no423_b18.g1 CHROMAT_FILE:
MSMg01no423_b18.g1 PHD_FILE: MSMg01no423_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:42 2005
         (493 letters)



>mm_chr19_60983763_60984655
          Length = 893

 Score =  953 bits (493), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaatactgaatggccgagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgaggaatactgaatggccgagaagcacctgaaaaaatgttcaacatccttaatc 260

                                                                       
Query: 61  atcagggaaacgcaaatcaaaacaaccctgatgtgcttatagctcttgtgtggtggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagggaaacgcaaatcaaaacaaccctgatgtgcttatagctcttgtgtggtggaaac 320

                                                                       
Query: 121 tacactttctctcagcagaatattcagagcccctggatttaaaaaacaaaacaaaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacactttctctcagcagaatattcagagcccctggatttaaaaaacaaaacaaaacaat 380

                                                                       
Query: 181 gctttacctagaaaattgcaaaaatttcctgaaggatggaactgagaccttaaaaacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttacctagaaaattgcaaaaatttcctgaaggatggaactgagaccttaaaaacaca 440

                                                                       
Query: 241 cacacactgtgtgtgtgtatctatccattcaccctttggccttactaggtactaaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacactgtgtgtgtgtatctatccattcaccctttggccttactaggtactaaaaata 500

                                                                       
Query: 301 ttccaggtctgcccatgaaggccagttataccaggcataccatcaaccattaggtttgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccaggtctgcccatgaaggccagttataccaggcataccatcaaccattaggtttgat 560

                                                                       
Query: 361 tctgttcttttgagacatagcaggtggtactctgccctttgctgagggtacttcctaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgttcttttgagacatagcaggtggtactctgccctttgctgagggtacttcctaaga 620

                                                                       
Query: 421 tcagacacctatcatgtctgctgcagggaagactgtattaattacttgttgttatgacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagacacctatcatgtctgctgcagggaagactgtattaattacttgttgttatgacaa 680

                        
Query: 481 aacatctgataga 493
           |||||||||||||
Sbjct: 681 aacatctgataga 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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