BAC Information

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BAC

Clone NameMSMg01-425H09
Chromosome19 (Build37)
Map Location 59,386,012 - 59,592,843
singlet/doubletdoublet
Overlap genePdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425H09.T7 (MSMg01no425_h09.b1)MSMg01-425H09.TJ (MSMg01no425_h09.g1)
ACCAG519138AG519139
length715741
length of high quality
(start - end)		562 (67 - 628)458 (71 - 528)
definitionCHROMAT_FILE: MSMg01no425_h09.b1 PHD_FILE: MSMg01no425_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:41 2005CHROMAT_FILE: MSMg01no425_h09.g1 PHD_FILE: MSMg01no425_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,386,012 - 59,386,573)(59,592,386 - 59,592,843)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGAATACCCCAGATACCAGCAAAAGTAAGAGGACACTATCAACCTTA
GACTGAAGGATAGACATATGTGGTGGAAACTGGAATGGTGGTTTGTCCTG
TGAGAAGAGTGGGCCAAGAAGGATAAACCAGCTGCCAGGAGGAAGAATAC
CCTGGTTTCTCTAGTTCACTCTTATTTCCCATGAGTGTTTCACATCCATC
AAGTACAGCGGAAAGCTACTGACACTGAGAACTTGAAACAACAGGGAACT
CTCCAGGAATGGAACTTGAAAGAAGTCCATGAATATATCTGAACAAGGGC
AGACAAGCTAAGACCTGGCACAAGCAGAACTCTGGAGAACATAGATGTAC
ATGGAGAAACAAGCTGGGTTAGCACATGCCCAGTCTTCAAGAAAGAACTT
TAGGACAATTTGGGAAGGATATACAGTTACCGGAGATGTATAGTACAGAA
TAAGGCCAGTAAGCAGCAGTGACTGCTAGTGTGACTAAAGCTCAGAGTGG
GAGGGAATATGAAGGGACCAGGCTTACCAGGTCACTTTCCTGGCCATACT
AAACGGCCTGTCCTTATCTTTGGGGCAATAAGGGATTACTCAGGGATTTA
ATCAAGCATCAGGGCATGATAATTTTTGCCAATCAGACCCTAAAGGAAAG
CCTCCTCCTTCCTTC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGCCAGTGGGAGACCCTATCTCAAAAAC
ATGAACAAAAGCAGACAGCCACCTGAGGAAAAGACACTTGAGACCTATAT
ACACACACCTCACATGTGTGGAAACACAGATGCACATACAGAGAATTTTC
ATCCACTCCCCCACATCTCAGCTTCTATAAGGAGAATGCTTTCCACCCTC
AGATTTTCTTTCTTGTGTATCCCAAACATCTGTATGTATACATTTGGCTT
CTCTTCTCTGAAACACGGGAGGAAGATAGATCCTTCTTGACCTTTCGTTC
CTCAGTTTTTCGAAGTCAGTTTTCTCAGAGTAAGGAAACCCTTTGTGTAA
TCACAGAGCAATAGCACCTTCAAGCTTCATGTGCATTGCTTTGTGCATAG
GGATGTCCGTTCTCTCACACTGTGATCCCACACACACACAGGCACACATG
AACACGCACAGGCACACGCACACTTGCTTATGAGCATGCACGCCCACACA
CACAGACACTCACACTTTTTCTTAAACATAGAACATTTTCTTTATCCATT
TGTTGGACATTTTGGGAAATTTTTAACCGTTACCACGTGGGCTTAGCAAT
GTTGTAAACATGAACATAATGAATTTCTGCTCAAGCCCCTACTTCCGCGT
TTGTTTTTCCGGGGGTAGGGGCAAGTGTTATCCCCCAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_h09.b1 MSMg01no425_h09.b1 CHROMAT_FILE:
MSMg01no425_h09.b1 PHD_FILE: MSMg01no425_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:41 2005
         (562 letters)



>mm_chr19_59385812_59386773
          Length = 962

 Score = 1056 bits (546), Expect = 0.0
 Identities = 558/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccagcaaaagtaagaggacactatcaaccttagactgaaggatagacatatgtggtgg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 taccagcaaaagtaagaggacactatcaacctcagactgaaggatagacatatgtggtgg 260

                                                                       
Query: 61  aaactggaatggtggtttgtcctgtgagaagagtgggccaagaaggataaaccagctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactggaatggtggtttgtcctgtgagaagagtgggccaagaaggataaaccagctgcc 320

                                                                       
Query: 121 aggaggaagaataccctggtttctctagttcactcttatttcccatgagtgtttcacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaggaagaataccctggtttctctagttcactcttatttcccatgagtgtttcacatc 380

                                                                       
Query: 181 catcaagtacagcggaaagctactgacactgagaacttgaaacaacagggaactctccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcaagtacagcggaaagctactgacactgagaacttgaaacaacagggaactctccag 440

                                                                       
Query: 241 gaatggaacttgaaagaagtccatgaatatatctgaacaagggcagacaagctaagacct 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatggaacaggaaagaagtccatgaatatatctgaacaagggcagacaagctaagacct 500

                                                                       
Query: 301 ggcacaagcagaactctggagaacatagatgtacatggagaaacaagctgggttagcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcacaagcagaactctggagaacatagatgtacatggagaaacaagctgggttagcaca 560

                                                                       
Query: 361 tgcccagtcttcaagaaagaactttaggacaatttgggaaggatatacagttaccggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcccagtcttcaagaaagaactttaggacaatttgggaaggatatacagttaccggaga 620

                                                                       
Query: 421 tgtatagtacagaataaggccagtaagcagcagtgactgctagtgtgactaaagctcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtatagtacagaataaggccagtaagcagcagtgactgctagtgtgactaaagctcaga 680

                                                                       
Query: 481 gtgggagggaatatgaagggaccaggcttaccaggtcactttcctggccatactaaacgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgggagggaatatgaagggaccaggcttaccaggtcactttcctggccatactaaacgg 740

                                 
Query: 541 cctgtccttatctttggggcaa 562
           ||||||||||||||||| ||||
Sbjct: 741 cctgtccttatctttggagcaa 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_h09.g1 MSMg01no425_h09.g1 CHROMAT_FILE:
MSMg01no425_h09.g1 PHD_FILE: MSMg01no425_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:41 2005
         (458 letters)



>mm_chr19_59592142_59592999
          Length = 858

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagtgggagaccctatctcaaaaacatgaacaaaagcagacagccacctgaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 caggccagtgggagaccctatctcaaaaacatgaacaaaagcagacagccacctgaggaa 643

                                                                       
Query: 61  aagacacttgagacctatatacacacacctcacatgtgtggaaacacagatgcacataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aagacacttgagacctatatacacacacctcacatgtgtggaaacacagatgcacataca 583

                                                                       
Query: 121 gagaattttcatccactcccccacatctcagcttctataaggagaatgctttccaccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gagaattttcatccactcccccacatctcagcttctataaggagaatgctttccaccctc 523

                                                                       
Query: 181 agattttctttcttgtgtatcccaaacatctgtatgtatacatttggcttctcttctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agattttctttcttgtgtatcccaaacatctgtatgtatacatttggcttctcttctctg 463

                                                                       
Query: 241 aaacacgggaggaagatagatccttcttgacctttcgttcctcagtttttcgaagtcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaacacgggaggaagatagatccttcttgacctttcgttcctcagtttttcgaagtcagt 403

                                                                       
Query: 301 tttctcagagtaaggaaaccctttgtgtaatcacagagcaatagcaccttcaagcttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttctcagagtaaggaaaccctttgtgtaatcacagagcaatagcaccttcaagcttcat 343

                                                                       
Query: 361 gtgcattgctttgtgcatagggatgtccgttctctcacactgtgatcccacacacacaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtgcattgctttgtgcatagggatgtccgttctctcacactgtgatcccacacacacaca 283

                                                 
Query: 421 ggcacacatgaacacgcacaggcacacgcacacttgct 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggcacacatgaacacgcacaggcacacgcacacttgct 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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