Query= MSMg01no427_o07.b1 MSMg01no427_o07.b1 CHROMAT_FILE:
MSMg01no427_o07.b1 PHD_FILE: MSMg01no427_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:54 2005
(287 letters)
>mm_chr19_41124463_41125149
Length = 687
Score = 495 bits (256), Expect = e-144
Identities = 279/287 (97%)
Strand = Plus / Minus
Query: 1 cagtttaaactccttttggttctaggtatcctgtaatggaactcatgcctctgcctcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cagtttaaactccttttggttctaggtatcctgtaatggaactcatgcctctgcctcctg 428
Query: 61 aatggctgaggtgagaagtgttagccaccatggttggttctgacttacagtcttactctg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aatggctgaggtgagaagtgtgagccaccatggttggttctgacttacagtcttactctg 368
Query: 121 tagactcaacattttgactcccagaagttccatgaactccaggggtgacagaccacctgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tagactcaacattttgactcccagaagttccatgaactccaggggtgacagaccacctga 308
Query: 181 ttcacttagggtccctgtaccccggtcccatttaccaggcctgaccgcaagcctgagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcacttagggtccctgtaccccggtcccatttaccaggcctgaccgcaagcctgagtca 248
Query: 241 tgatttctttcnccttcctttgaggtgagctaccagcagtctgcttg 287
||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct: 247 tgaagtctctctccttcctttgaggtgagctaccagcagtctgcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no427_o07.g1 MSMg01no427_o07.g1 CHROMAT_FILE:
MSMg01no427_o07.g1 PHD_FILE: MSMg01no427_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:54 2005
(492 letters)
>mm_chr19_40944030_40944921
Length = 892
Score = 822 bits (425), Expect = 0.0
Identities = 470/491 (95%), Gaps = 11/491 (2%)
Strand = Plus / Plus
Query: 1 tatatatcaaaaccacacaacacagaaataaaaggctataaagatatataattaagatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatatcaaaaccacacaacacagaaataaaaggctataaagatatataattaagatgg 260
Query: 61 gaaagctgcctaaatccaagatgtacactcttttaaacttggacattttggagatcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagctgcctaaatccaagatgtacactcttttaaacttggacattttggagatcagag 320
Query: 121 acatcacagttagggtgtagtcagacagccgtaggtggagagaacacatgtgaagcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcacagttagggtgtagtcagacagccgtaggtggagagaacacatgtgaagcagag 380
Query: 181 agacttacagcatcagtgtgagggcttagaagaaaatcccaaactcaataggaaaatatc 240
| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aaacttacagaatcagtttgagggcttagaagaaaatcccaaactcaataggaaaagatc 440
Query: 241 cttttaaggattctggatgtctcaagatgactggatgtctgaaggaataaaaaggctcag 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 cttttaaggattctggatgtcgcaagatgactggatgtctgaaggaataaaaaggttcag 500
Query: 301 ccagatgtggtggtgaacatctgtaaccctaaagctcaggaacctgagacaggaggattt 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagatatggtggtgaacatctgtaaccctaaagctcaggaacctgagacaggaggattt 560
Query: 361 ccaagagtttgaggcta----------tataccaaattcaagaatagcatgagccacata 410
||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggagtttgaggctagtcaaggctatataccaaattcaagaatagcatgagccacata 620
Query: 411 gcaagaccctgtctcaaaataaataaataaatgaaggaaggaaggaaggaaggaaggaag 470
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaagaccctgtctcaaaatgaataaataaatgaaggaaggaaggaaggaaggaaggaag 680
Query: 471 gaaggaaagaa 481
||| ||||||
Sbjct: 681 aaag-aaagaa 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
