BAC Information

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BAC

Clone NameMSMg01-429M12
Chromosome19 (Build37)
Map Location 61,075,496 - 61,075,740
singlet/doubletsinglet
Overlap geneGprk5
Upstream geneLOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, LOC671322
Downstream geneBC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429M12.T7 (MSMg01no429_m12.b1)MSMg01-429M12.TJ (MSMg01no429_m12.g1)
ACCAG522429AG522430
length727740
length of high quality
(start - end)
237 (362 - 598)244 (69 - 312)
definitionCHROMAT_FILE: MSMg01no429_m12.b1 PHD_FILE: MSMg01no429_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:22 2005CHROMAT_FILE: MSMg01no429_m12.g1 PHD_FILE: MSMg01no429_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXATACCAGAGGATCCGCGGAATTCT
TTATTTGCCGCTTAATGGATCATCCTAGTATGAATATGGAAGACTTTGTT
GCTGGGAGTGATTTGGACTGTGTTGACCTGGTCCAAGAGATTTCAAAGGA
GAAGGATTTCAAAATGTAGCATAAAGACTGTTTTTGTGATATTTTGGTGA
AGAATGTGCCTACATTTTTGCCCTTGTCTGAAAAGTCTGCCTGAGGCTAA
GGTGAAGAGACTCAGATTAATCGACAAAGGAAGATTCAAAAAAGCCCAGC
AGTGACTTTGTTCTCTGGTTAAGTCTTATGAAGAGGAGTTTGAACAAGCA
GAGCTAGCTTAGAAAGGAAAAATATAAAATATATGGTTCGAGTATTAAAG
GGGTGCCAGGAAGTGAAATGAAGCAAAATCCTGTGTTCTAGGAGATAACA
GATTAAGGGATCGAGACCTTGGGGCAAGATCCTACCCAGCTAAATTTAGA
TCCAGGCATGGTGATACACACCTTTAATCTCAGGAGACAGGCATACTGAT
CTCTGCATTCAAGGTCAATATACAGAGCAAGATCCAGGATAGCCAAACTT
AGGCAGTGAAGGATTTAGAACACATAAAGCCAGTGATAGTATAATAGTAC
AAGGGGTCATGTTCTAGATTCCGCAAGCAGCAGAACTAGGCAGCTTCAGC
CATTGTGGCTCTGGCTCTAAAGTAAAA
TATGATAGTGGAGGCCTGGNGGCCGCCTGGTTCTCAAATTTAGGTGAACT
ATAGAAGTTCCAGCGGAATTCTTGCTTGAACATTTTTGTTCCCTCCAGAG
AGGGCAAAGTCACTTACCCCTCCGCACTGATTGCTGAGGGATCTTGTTTT
CTGCTCTAAGTTCTTTCAAAAGGGAAATGTGGGCTGAGAGAAACTATTGC
CATCAACTTTGAAATAGCTGCTTCCTTTTTTTTTTTTTTTTTTGGGTTTG
CTTTGGCTTGCTTTGCTTTTGTCAGAAATGATCCCAGGGAGATATGTTCA
GTTATACTGCTTGTTCTTTTTCTCTTATCTAATTCTGGGCTTCAGCAGGC
CTCAATGTTATTCCCGCCTGAGTTGGAGGAGGGGACATTCTGCTAGTACA
TTTACGCGCTGGTGCGTTTTTATAAGCTCTGCCTTCACCCTCCGCTTGTC
TCACCTCCCAACGCCCCCACCTTTGTCCCACCCCGCTCCCCTCCCTTCTT
ACCCTCCTTTCTTCCCCCCCTTAACCACCCCTCTCTACTTTTTTTTTATT
TTGTCCCCCCTCTACTCCCAAACTTTACTTTTTTTTTCCCCCCCCCCCCT
TTTTTTCTCTTTCCCCCCCCCCCCCTTTTTTCTCTTCTCCCCTTCCCCAC
AATTTATTCCTCCTTTATTTTTCCCTTTTTCTCCCTTCCCCCCCCTCTTT
ACCCTCTTCAACACCCTCTTCTTTTTCTCCCCCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_m12.g1 MSMg01no429_m12.g1 CHROMAT_FILE:
MSMg01no429_m12.g1 PHD_FILE: MSMg01no429_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:22 2005
         (244 letters)



>mm_chr19_61075296_61075940
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttgcttgaacatttttgttccctccagagagggcaaagtcacttacccctccgcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttgcttgaacatttttgttccctccagagagggcaaagtcacttacccctccgcact 260

                                                                       
Query: 61  gattgctgagggatcttgttttctgctctaagttctttcaaaagggaaatgtgggctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattgctgagggatcttgttttctgctctaagttctttcaaaagggaaatgtgggctgag 320

                                                                       
Query: 121 agaaactattgccatcaactttgaaatagctgcttcctttttttttttttttttt-gggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 agaaactattgccatcaactttgaaatagctgcttcctttttttttttttttttttgggt 380

                                                                       
Query: 180 ttgctttggcttgctttgcttttgtcagaaatgatcccagggagatatgttcagttatac 239
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttggtttgctttgcttttgtcagaaatgatcccagggagatatgttcagttatac 440

                
Query: 240 tgctt 244
           |||||
Sbjct: 441 tgctt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)