BAC Information

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BAC

Clone NameMSMg01-431P17
Chromosome19 (Build37)
Map Location 58,634,795 - 58,635,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043038, Atrnl1, Gfra1, LOC100043503, 1700011F14Rik
Downstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431P17.T7 (MSMg01no431_p17.b1)MSMg01-431P17.TJ (MSMg01no431_p17.g1)
ACCAG524112AG524113
length931779
length of high quality
(start - end)
---384 (61 - 444)
definitionCHROMAT_FILE: MSMg01no431_p17.b1 PHD_FILE: MSMg01no431_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:32 2005CHROMAT_FILE: MSMg01no431_p17.g1 PHD_FILE: MSMg01no431_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCGGAATTCTTCTATA
ATAATACCGTCATTATATGGAAAGAAGGAGGAGGAGGCCCCCCCGCNTCC
TGCCCTTCCCCCCCCTCCCCCCCGCGCTGCCCTCTTTCCCCCCGTGCGNC
GCTGTCTCCTTTTTCGGAGGGCGGCTCTCCCGTGTCCCCTCGTTCCTGCG
TCGTCTACTGCCCCCTCCGCCGAGCCCCCGTACCACACCCGCCGTTAACG
AGCTCCTATTTACAAAAGTACCCTAGCCGCCCAGACAACGCCAGAAGCGC
AGCACCAAAGGACATCGGCGCCCGCCCATTTTTTTTTTCCCGAGCCAGGC
ACAGAGACACCACCCGATTAAGCCGCGTACCCTTTCTCTTTACCTCCACG
NNCGGCCACCCCNCACCAGGCCAACGCACCACCCCCCCCCCCCCCCCACG
AGGGCCCAGAACCCCATTTATCCCCCTTCCGAGACACACAGCCCTTCCCC
CCTTCACACTCACCTTCGGATCCTAGTATATTGCCAGCCCAAGTTCCCCC
TCATCTCACTTCCCGCCCCGCCTCCACTGACTATTCTCTAGTCTGTAATA
TCTCCTCCCCCGCTTTTACTTTCATCACCTTACCGCCCATCCCCCTACTN
ATACTATAACACCCTATGTACCATCACTCCCCCTCTCTTCTCTCATCTAT
TTACTCACTAGACCCCACACACACCTCTTATAAAATTTCTTCTCTACGCC
CTACACCTACCACCTCTTTATTCATCATATCCCACCCAATACTCCCTTAC
CACACTCCCATGTACTCATATGCCCTAACCTTACTCCACCTCCTTATTCC
CTCCCTATTACCTCCCACCACCTATATCCCATCACATCTATTCCCCTTCC
TTCTATCATCTATCACCCTCCCCCCTCTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAACCTCCTCTGCAGTCAGATTCATATCTACTGCATCCTGT
CTTCTCGGCAGGTCTCACCTCTCTGCTCTTGTCCACAAAGGCATAGGCTT
CTCATTTCCCTAGCAATCTTTCTCTTACTAGCAAAATTCTCAGTGGCTAT
GGAGGTTGAGTGTGGCCTGTAGCTCTGGGGTGAGAAATACCTCTTACCTC
CTCATGCACAAGAGCTCAAATGTCATGCTTCATCCTTACAGGCAAAGGAT
ACCTGGACCAGCCCCTTGTGACAGTACATTTTAAAATGTACTTTAAAATG
TGTTCGTTTATTTATGCATATGAGTGTTTTGTCTGCATGTGTGAATGCAC
ACCGGGCACGGCTCCCACCTGCCAAGGTGGCAAGGGGTGAGGAGAGTGTT
TAGCTCATCCCTCCCTTGTACACTTTTTCCATTTATTACAAATGGCGGAT
TTGTCTCTCTTTTTTGTCTTGCCCTTTATTTATGTGGTTCTCTTGCTTCT
CTCCCTTTTTTCTGTCGTTTTGTCTTTCCCCCTTCTCCCTTATCCACCCT
TCCTCTTTATTCTCCTTTATTCCTTCCTCCCTTTTCCTCTTTTTCTATAT
TTCCTGCTTTACTTTTTCCTCCTGTTTTTCTTCTTTTCTACTTTCTCCTC
TTTCCTCTTTTTATTTTTCCTTATTCCTCCCACTCTCTTTTATTTCCCCT
TTCCTTTCTCTTCCTTCTCTCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_p17.g1 MSMg01no431_p17.g1 CHROMAT_FILE:
MSMg01no431_p17.g1 PHD_FILE: MSMg01no431_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:32 2005
         (384 letters)



>mm_chr19_58634683_58635466
          Length = 784

 Score =  688 bits (356), Expect = 0.0
 Identities = 377/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctcctctgcagtcagattcatatctactgcatcctgtcttctcggcaggtctcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacctcctctgcagtcagattcatatctactgcatcctgtcttctcggcaggtctcacct 437

                                                                       
Query: 61  ctctgctcttgtccacaaaggcataggcttctcatttccctagcaatctttctcttacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctctgctcttgtccacaaaggcataggcttctcatttccctagcaatctttctcttacta 377

                                                                       
Query: 121 gcaaaattctcagtggctatggaggttgagtgtggcctgtagctctggggtgagaaatac 180
           ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct: 376 gcaaaattctcagtggctatggaggctgagtgtagcctgtagctctggagtgagaaatac 317

                                                                       
Query: 181 ctcttacctcctcatgcacaagagctcaaatgtcatgcttcatccttacaggcaaaggat 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 316 ctcttacctcctcatgcacaagagctcaaacgtcatgcttcatccttacaggcaagggat 257

                                                                       
Query: 241 acctggaccagccccttgtgacagtacattttaaaatgtactttaaaatgtgttcgttta 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acctggaccagccccttgtgatagtacattttaaaatgtactttaaaatgtgttcgttta 197

                                                                       
Query: 301 tttatgcatatgagtgttttgtctgcatgtgtgaatgcacaccgggcacggctcccacct 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 196 tttatgcatatgagtgttttgtctgcatgagtgaatgcacaccgggcacggctcccacct 137

                                   
Query: 361 gccaaggtggcaaggggtgaggag 384
           ||||||||||||||||||||||||
Sbjct: 136 gccaaggtggcaaggggtgaggag 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)