Query= MSMg01no432_h16.b1 MSMg01no432_h16.b1 CHROMAT_FILE:
MSMg01no432_h16.b1 PHD_FILE: MSMg01no432_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:13 2005
(474 letters)
>mm_chr19_11441374_11442241
Length = 868
Score = 808 bits (418), Expect = 0.0
Identities = 458/474 (96%), Gaps = 6/474 (1%)
Strand = Plus / Minus
Query: 1 cagcggcagactctggaaatatattcatgacagaggactatgaagagtggaggatgcagt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 668 cagcggcagactctggaaatatattcatgacagaggactatgaagaatggaggatgcagt 609
Query: 61 cccaaatgcttgctactaattgccacaggaaacaaaaagtcacagagctggcatctggca 120
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 608 cccaaatgcttgctactaattgccacaggaaacaaaaaggcacagacctggcatctggca 549
Query: 121 actgacaactcatacagttgaatcttgtgtcagtataatataaaaaaagattgtggtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actgacaactcatacagttgaatcttgtgtcagtataatataaaaaaagattgtggtatg 489
Query: 181 aatacaaaatctttccaagttaatgaaacttggcaaaagctagctgagttgacaatttta 240
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 488 aatacaaaatctttccaagttaatgaaacttgacaaaaactagctgagttgacaatttta 429
Query: 241 ctgctgtaaaaattataaacatcaaaaagaataagacttaaaatggtttgattcctgtta 300
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 428 ctgctgtaaaaattagaaacatcaaaaagaataagactt-----ggtttgattcctgtta 374
Query: 301 agtactttcaaaagtactaaagaaccatataactctacctgaaaagtctagaaggcagtt 360
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 373 agtactttcaaaagtactaaagaaccatataactctac-tgaaaactctagaaggcagtt 315
Query: 361 atcctctgcacttaagtttagaagaatcacggtatctgctggtacgtgttatgatactaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atcctctgcacttaagtttagaagaatcacggtatctgctggtacgtgttatgatactaa 255
Query: 421 taaatagtggtacagcagctgatgcagtgatttctaaagagataattctatggc 474
||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct: 254 taaatagtggtacggcaactgatgcaatgatttctaaagagataattctatggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 868
Length adjustment: 10
Effective length of query: 464
Effective length of database: 858
Effective search space: 398112
Effective search space used: 398112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_h16.g1 MSMg01no432_h16.g1 CHROMAT_FILE:
MSMg01no432_h16.g1 PHD_FILE: MSMg01no432_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:13 2005
(454 letters)
>mm_chr19_11252111_11252964
Length = 854
Score = 839 bits (434), Expect = 0.0
Identities = 449/454 (98%)
Strand = Plus / Plus
Query: 1 aataggcacatatagtgaccatgtacctatgttccagtacacgttatttcaggatctggg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataggcacatataatgaccatgtacctatgttccagtacacgttatttcaggatctggg 260
Query: 61 ggaatttgcagagactgaattgcacggttcttttgcgtagatagacattttcatgttatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ggaatttgcagagactgaattgcacggttcttttgcgtagatagacattttcatgttacc 320
Query: 121 tcaggaaagctgtaggaactctttcccttccttatcaaatggagtcagtttctgttttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggaaagctgtaggaactctttcccttccttatcaaatggagtcagtttctgttttca 380
Query: 181 acataggatcagagtgccttggaagttgctgggaggaagaataattagcagcctggatgc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataggatcagagggccttggaagttgctgggaggaagaataattagcagcctggatgc 440
Query: 241 ctagagactgtgcaaatggcctggggcattatgaaaaattagttttgcttagactttaat 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagagactgcgcaaatggcctggggcattatgaaaaattagttttgcttagactttaat 500
Query: 301 ttttttattttattattttttattagatattttctttatatacacttcaaattttaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttattttattattttttattagatattttctttatatacacttcaaattttaaatg 560
Query: 361 ctatcccaaaagttccccataccctccccaccccccaactcccctacctgcctactccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatcccaaaagttccccataccctccccaccccccaactcccctacctgcctactccta 620
Query: 421 cttcttggccctggcgttcccctgtactggggca 454
|||||||||||||||||||||||||||| |||||
Sbjct: 621 cttcttggccctggcgttcccctgtactagggca 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
