BAC Information

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BAC

Clone NameMSMg01-433N18
Chromosome19 (Build37)
Map Location 17,709,345 - 17,709,486
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433N18.T7 (MSMg01no433_n18.b1)MSMg01-433N18.TJ (MSMg01no433_n18.g1)
ACCAG525543AG525544
length761794
length of high quality
(start - end)
146 (37 - 182)61 (69 - 129)
definitionCHROMAT_FILE: MSMg01no433_n18.b1 PHD_FILE: MSMg01no433_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:04 2005CHROMAT_FILE: MSMg01no433_n18.g1 PHD_FILE: MSMg01no433_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAG
AATCCCATGGGAAAGTATCAAGTGTATTTATTTCTAAAAATGACACCAGG
CTAAGTTCAGAAAAGCAATTAGACATTAGCTTGCTTTTCTTCCTTTTTCT
CAGGATATATAACCTCACGCATTTCCTGAATGTTTGGTAATTTTGTACCT
ACAAAATACACATCAAATCTACTAACAATCTTGCCCACCCCTCTTCGCAG
TTACGATGGCCTNCCGNTTAAGAGCTGCGGGGGGACCCGGAGGGGCGGGT
GGGGGGGGGGCGGGCGGGGNTCTNAAAANNNNNNNNATCTTCTTGTTTAA
TTTGAAAAAAATTTGTCTTTTTGAGAAGATTGCCTTTTTTCTTTTTTTTN
NNCCNNNCCNTTCTTCTTCTTTTCTCCCCCCCCCCACCCACCCCATTCCT
CACCTCCCCCCCCCCCTCTTCCTCCCTTCCCCCATTACACCCTCCCCTTC
CCCCCCTTCTCCTTCTTCCCCCCTTTTTTTCCCCCCCCCCTCACTCCCCC
TCTTTTTCCTCTCTTTTCTCTTCCTTCTTCTTTCCCACCTCCCCTCTTTC
CCCCTTCTCCTCTTTTCCCTCCTCTCTTTTTTCTCTCCCCTTCTTTCCAT
CTTCTTCTCCTCCTTTTCTTCTTTATCTCTTTCCCCCCCCTCCCCTCCCC
ATCTCTTACTTGGGTGGTTTTNNNTNNNNACTAATNTTTTTCCCTACCTC
TCTTTTAATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGGACCAGCAGTGCTTGCTCACAGGCCCCTT
CTTTCCTGAGCACTCAGTGCATTTCTTTTCCCCAGGGAACTGGGAACTAA
TTGCCATTACCATCAAAGTGTNNCTTATCAATTCCTTGTGAGGGTAGAAG
NNNNNNNCTCCTANAGAGTGAGTGACGGGAGGGTTGGGGGGGGTGGGTAA
NNTTGGNCCCGGAAAAACCCTCCCACAAAACGGGAAAAAATATTTTTTTG
TAACTTAAGGGAAAAATTCCTCGGAAAAAACCCATTCCCTCCCTCTTCCT
TTCCCCCCCCTCCTCCTTTCCTTTTCCCCTCTTTTTNTTTCTTCCCCACT
TTCCCTTCCCTNCCCTTTTCCCCCNCCCCCCCCACCTACCATTTACTCCT
TTCATCTTTTCCCTTCTTCCCCTTCCCCCCCCCCTTCTCTTCCTTTTCCC
TTTTCCCCCTTCCCTTCCTCCCNCTTTCCCCCCTTTCCCCCTTTCCCCTT
TCCTTCTTCCCCTTTTTCCCCCTCCCNTCCCCTTTTCTCTTTTCTCTTTT
CCTTTCTCCCCTTTCTCTCCCTCCTCTTCTCTTTTTCTCTCCCCTCTCAT
CTTCCCCTCCTTCCTNCTTCCTTCTCTCCTTTCCTTCTCCCTCCCTTCTT
CCCTTCACTTTCCTTCTTCTCCCCTCACTTCCCCTCTTCCCTTTTCCTCC
TCTTCCTTCTTCCATTTCTGTTCGGATTATTCGTTTCAGGTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_n18.b1 MSMg01no433_n18.b1 CHROMAT_FILE:
MSMg01no433_n18.b1 PHD_FILE: MSMg01no433_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:04 2005
         (146 letters)



>mm_chr19_17709141_17709686
          Length = 546

 Score =  275 bits (142), Expect = 1e-78
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagaatcccatgggaaagtatcaagtgtatttatttctaaaaatgacaccagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagaatcccatgggaaagtatcaagtgtatttatttctaaaaatgacaccagg 264

                                                                       
Query: 65  ctaagttcagaaaagcaattagacattagcttgcttttcttcctttttctcaggatatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaagttcagaaaagcaattagacattagcttgcttttcttcctttttctcaggatatat 324

                                 
Query: 125 aacctcacgcatttcctgaatg 146
           ||||||||||||||||||||||
Sbjct: 325 aacctcacgcatttcctgaatg 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)