BAC Information

Click to search

BAC

Clone NameMSMg01-434C23
Chromosome19 (Build37)
Map Location 22,468,803 - 22,469,255
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434C23.T7 (MSMg01no434_c23.b1)MSMg01-434C23.TJ (MSMg01no434_c23.g1)
ACCAG525792AG525793
length743767
length of high quality
(start - end)
563 (34 - 596)453 (68 - 520)
definitionCHROMAT_FILE: MSMg01no434_c23.b1 PHD_FILE: MSMg01no434_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:31 2005CHROMAT_FILE: MSMg01no434_c23.g1 PHD_FILE: MSMg01no434_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCAAG
AGCAGACACCAGAATCAGAGAGACTCATTCATTCTCACACTCATGACAAC
TATAAAATTACTAAGCTGGAAGTGATTATATAAAACCTCAAAAGTACTTG
ATTCAGATCTGAAGGACCTGTGCTTGCTGCTTCACTCTCTGTGCTTGTTT
AGTTGTTTAGTTGTTTGGAGGTCCTTTTTCTCCTGGTGTCCTCCATCCTC
TCTGGCCCTTACAATCTTTCTGCCTCCTGCTGTTTGGGGCTCCCTGAGGT
CTGACAGGAGCGATTTGATGCAGACATCCCATTTAAACTATGTCTCCACG
TAATGTCTGGCTTTTGGTCTTTGCATCTGCTCCCATCTGCTGCTGGAAGA
AGCTCCACTAATGACCAAACAAGGTTTCAACTGCAAAAAGCTTCTTGGTT
AGGGGTTGGACTCTATGTCCACATTCTATAGCTGTTTCTTCAGCCCTCTA
AACCCCAGAACAATAAATAAGAGAGGAATAAGGGATAGAGAGAANAGAGG
TCCCTGAATAAAAGGGGTGACATTATCATTAGATGTTCTGCTGATTGGGG
GTGTCGAGTTCCTTGGGGCAAGTTTGATCTTTTGCCATTATGATATCTAG
CCTCTTCTTGTTCTTTCCTCTTTGGACACGGCTACTTTACCAACCAGTAC
CCATATTAATCCATCAACTGTTTTTTCCAAACCCACCCCGCCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCCATCTTCCTTGGAGCATGATGCCCTCCACA
ATGGATTCCAAATTCAGTTCATCTGAAAAGAAGTTTGACCTACCCATAAT
TTTATAGGGCATGGGTCATGGCCTGACCCCATTTGAAGAAAAATGGCTAT
ACTTTGTGAGGCTATATACTTGAAAGGAATGTTAGTGTAATGCCTTTATC
CTTTTTGAAATTCCATTACAGGGTACTCCAAGGCCAAATTAATTTCTGGA
AATGTCTTATTGGATATCAGGGAAAGCAGGCAGAGTGATCGTGGCTGTTA
CTGATTCTGTAGGAAGTAGCTATGAGGAGATCTGAGACAGCCTAGACCAA
CTATGTAGCCAGGGGAATTTTTGATATTTCAGAAAACTCTGGCAAGGTAC
TTCAATCCTATAGAAACTTAGATTTGAGATGTTCTGAAAGCAGTCGAGAT
ATTTCAATCGAGCCATTCCACTTAATAAAAGCCTAATGGTTTTCAGAACA
AGGTCTTTCCTGTATTCCCTTCAACCTTTTTCCACATTANATATTAAAGG
CCGCCGAGACAATTAAGAATTTAAGGTTGGCTCAATGGCCCGAAAAAATA
ATTTGCTGGGGATAAAACAATCTTGAAACTCTTTAAAATTTTATTTTCTT
CCTGGCGATTTTATTAAAGAGGTGGACAAACGGCCTCCTATTTGGGCTTC
TCAATTCCCCTAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_c23.g1 MSMg01no434_c23.g1 CHROMAT_FILE:
MSMg01no434_c23.g1 PHD_FILE: MSMg01no434_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:31 2005
         (453 letters)



>mm_chr19_22468603_22469455
          Length = 853

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccatcttccttggagcatgatgccctccacaatggattccaaattcagttcatctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atccatcttccttggagcatgatgccctccacaatggattccaaattcagttcatctgaa 594

                                                                       
Query: 61  aagaagtttgacctacccataattttatagggcatgggtcatggcctgaccccatttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagaagtttgacctacccataattttatagggcatgggtcatggcctgaccccatttgaa 534

                                                                       
Query: 121 gaaaaatggctatactttgtgaggctatatacttgaaaggaatgttagtgtaatgccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaaaaatggctatactttgtgaggctatatacttgaaaggaatgttagtgtaatgccttt 474

                                                                       
Query: 181 atcctttttgaaattccattacagggtactccaaggccaaattaatttctggaaatgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atcctttttgaaattccattacagggtactccaaggccaaattaatttctggaaatgtct 414

                                                                       
Query: 241 tattggatatcagggaaagcaggcagagtgatcgtggctgttactgattctgtaggaagt 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 413 tattggatatcagggaaagcaggcagagtgagcgtggctgttactgattctgtaggaagt 354

                                                                       
Query: 301 agctatgaggagatctgagacagcctagaccaactatgtagccaggggaatttttgatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agctatgaggagatctgagacagcctagaccaactatgtagccaggggaatttttgatat 294

                                                                       
Query: 361 ttcagaaaactctggcaaggtacttcaatcctatagaaacttagatttgagatgttctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttcagaaaactctggcaaggtacttcaatcctatagaaacttagatttgagatgttctga 234

                                            
Query: 421 aagcagtcgagatatttcaatcgagccattcca 453
           |||||||||||||||||||||||||||||||||
Sbjct: 233 aagcagtcgagatatttcaatcgagccattcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)