Query= MSMg01no435_j06.b1 MSMg01no435_j06.b1 CHROMAT_FILE:
MSMg01no435_j06.b1 PHD_FILE: MSMg01no435_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:23 2005
(435 letters)
>mm_chr19_50415336_50416168
Length = 833
Score = 650 bits (336), Expect = 0.0
Identities = 367/378 (97%), Gaps = 4/378 (1%)
Strand = Plus / Minus
Query: 3 ggaattctgacataa-ttgatgattggatattttgctttatatcgaagaccccatttcct 61
||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||||
Sbjct: 375 ggaattctgacataagtt-aagattggatattttgctttatatcgaagactccatttcct 317
Query: 62 ttcttccagaatacctactgttttggatgtatagcatataatacctaacacctgtcattg 121
||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 316 ttcttccggaatacc--ctgttttggatgtatagcatgtaatacctaacacctgtcattg 259
Query: 122 agtgtccccataaccttgtccctttcttgtgtcctttgtgtcccactgtgaactattctt 181
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 258 agtgtccccataaccttgtccctttattgtgtcctttgtgtcccactgtgaactattctt 199
Query: 182 tctctctattcctctcctatcttttcactttcttcttcctttcctttgtgctcttttcta 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 198 tctctctattcctctcctatcttttcactttcttcttcctttccttcgtgctcttttcta 139
Query: 242 caaatcaactgttctttttctttctttttttttcatcagaatctatagttctaaatcacc 301
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 138 caaatcaactgttctttttctttatttttttttcatcagaatctatagttctaaatcacc 79
Query: 302 actcattatgaggcaatccattgaatgctcacacatttacaaacagtgtccaccttaggt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 actcattatgaggcaatccattgaatgctcacacatttacaaacagtgtccaccttaggt 19
Query: 362 tgcattgctacttacaaa 379
||||||||||||||||||
Sbjct: 18 tgcattgctacttacaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 833
Length adjustment: 9
Effective length of query: 426
Effective length of database: 824
Effective search space: 351024
Effective search space used: 351024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_j06.g1 MSMg01no435_j06.g1 CHROMAT_FILE:
MSMg01no435_j06.g1 PHD_FILE: MSMg01no435_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:23 2005
(224 letters)
>mm_chr19_50278862_50279483
Length = 622
Score = 317 bits (164), Expect = 3e-91
Identities = 209/224 (93%), Gaps = 2/224 (0%)
Strand = Plus / Plus
Query: 1 cacatctcagacacagattttccaatatgtctacatctgcagcccagtacaagatgcagg 60
|||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct: 201 cacatctcagacacagattttccaatgtttctacatctgtagcccagtacaagatgcagg 260
Query: 61 gtgctctagttactctagggggtggggggaggtacggcagctgacagcctagctcctata 120
||| ||||||||| | | ||||||||||||||| |||| |||||| ||||||||||||||
Sbjct: 261 gtgttctagttacac-a-ggggtggggggaggtgcggctgctgacggcctagctcctata 318
Query: 121 ttgaactatgttctctatcacggtgtaaaacacagaacggacccagaaagaaagctctac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 ttgaactatgttctctatcacggtgtaaaacacagaacggacccagaaagaaagttctac 378
Query: 181 cccctgagcttgattgtgcgatgctctcagaaattgaatacagt 224
|||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 379 cccctgagcttgattgtgttatgctttcataaattgaatacagt 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 622
Length adjustment: 9
Effective length of query: 215
Effective length of database: 613
Effective search space: 131795
Effective search space used: 131795
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
