Query= MSMg01no438_b01.b1 MSMg01no438_b01.b1 CHROMAT_FILE:
MSMg01no438_b01.b1 PHD_FILE: MSMg01no438_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:41 2005
(307 letters)
>mm_chr19_18682895_18683602
Length = 708
Score = 542 bits (280), Expect = e-158
Identities = 301/310 (97%), Gaps = 5/310 (1%)
Strand = Plus / Plus
Query: 1 cagcagtgtctaggggatgaaaccgaagctctgtttcttgctgacgtcctgacagacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcagtgtctaggggatgaaaccgaagctctgtttcttgctgacgtcctgacagacatc 260
Query: 61 taacaacagatcaagaacacacggtgatcaagtttactgatccaattttacttaaggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacaacagatcaagaacacacggtgatcaagtttactgatccaattttacttaaggaag 320
Query: 121 gcagactcaccgatgtcaaagagctgtgctcttggacatgcaacaaagctttctaaggct 180
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagactcacagatgtcaaagagctatgctcttggacatgcaacaaagctttctaaggct 380
Query: 181 ctctgctcattcactcaccaagtattgttacatacaacagagaaagcaggaagctaagag 240
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ctctgctcattctctcaccaagtattgttacatacaacagagagagcaggaagctaagag 440
Query: 241 actgtggaaatggtctgaaattgggatccataagaatgaagggc---cccccccaaaaaa 297
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 actgtggaaatggtctgaaattgggatccataagaatgaagggctcccccccccaaaaaa 500
Query: 298 aaaaggccca 307
|| ||||||
Sbjct: 501 aa--ggccca 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 708
Length adjustment: 9
Effective length of query: 298
Effective length of database: 699
Effective search space: 208302
Effective search space used: 208302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_b01.g1 MSMg01no438_b01.g1 CHROMAT_FILE:
MSMg01no438_b01.g1 PHD_FILE: MSMg01no438_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:41 2005
(496 letters)
>mm_chr19_18823789_18824684
Length = 896
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%)
Strand = Plus / Minus
Query: 1 ctcctcgtccgggacacctcccaggactcgattcctcctggactcggactccggagtccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctcctcgtccgggacacctcccaggactcgattcctcctggactcggactccggagtccg 637
Query: 61 ggactcacacgcgcgccctgccgcctcgaccctgggttcggtttccgctcggccctgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggactcacacgcgcgccctgccgcctcgaccctgggttcggtttccgctcggccctgacc 577
Query: 121 cagctccaggccggtcccaactcccggaagaaagactgcgggtcctgcccttcggaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cagctccaggccggtcccaactcccggaagaaagactgcgggtcctgcccttcggaaggg 517
Query: 181 tccacgcggttgccaaaacctcagctacgataatcatgttcgggtggagactagaggact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tccacgcggttgccaaaacctcagctacgataatcatgttcgggtggagactagaggact 457
Query: 241 tgaaagctagcatttcgcaaatcctacctattcgagatcgcagttagatacgcgtgcgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgaaagctagcatttcgcaaatcctacctattcgagatcgcagttagatacgcgtgcgcc 397
Query: 301 tgactccacccactgccacctggggccctgggcctgacccctgtgcataggagagcactc 360
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 396 tggctccacccactgccacctggggccctgggcctgacccctgttcataggagagcactc 337
Query: 361 agctgcaggtccggctttcatcctagatttttccaggccagcaaccaaaacaaggtctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 336 agctgcaggtccggctttcatcctagatttttccaggccagcaaccaaaacaatgtctga 277
Query: 421 gcttttgactgtggagtcaatctgggctccacctgcacatggacgctgtcttttacagcc 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcttttgactgtggaatcaatctgggctccacctgcacatggacgctgtcttttacagcc 217
Query: 481 ctgaggagttttcaca 496
||||||||||||||||
Sbjct: 216 ctgaggagttttcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
