BAC Information

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BAC

Clone NameMSMg01-438J09
Chromosome19 (Build37)
Map Location 32,252,502 - 32,252,941
singlet/doubletsinglet
Overlap geneSgms1
Upstream genePrkg1, 8430431K14Rik, 1810073H04Rik, Asah2, EG668042
Downstream gene2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438J09.T7 (MSMg01no438_j09.b1)MSMg01-438J09.TJ (MSMg01no438_j09.g1)
ACCAG529145AG529146
length779825
length of high quality
(start - end)
444 (37 - 480)346 (65 - 410)
definitionCHROMAT_FILE: MSMg01no438_j09.b1 PHD_FILE: MSMg01no438_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:25 2005CHROMAT_FILE: MSMg01no438_j09.g1 PHD_FILE: MSMg01no438_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGCATCCGCGGAATTCTAG
CTTTTTACCAGGATTTATATGTCACAACTAGATGCCATGCTAGTCTTTGA
AAAAAGTGAGAGCTGGAACACAGAGGGAAAGCAGAAAGAGGGAAAACAGA
ACAAGAGTTGCCTAAGGATTCAAGTCCAGGGTGATATGTCCCTTTAAATG
TGAGTGGCCACCTGGAACAGTGTCAGGCTGCCATGGGCTTACCATAGCCC
ATCTTCTTGGAAATCTCTGTTGCTGGGACACTGGATAAACCCTGTTAATA
CCAGTAGTCTTGGCAGGGCATCAAGGAAGATGGTGAACAGCTGCCTCCCT
TAAGACCACAGCAGACATTTTCGCTACCAGTCCAGGGGGCAAGCTCCTTC
CCTCTGGAGCCCTGAGACTTTCCTAAGTGCCAACACTCCAGTGCTCTTCA
GAAAGACTCGGCAAGTCACCAAGATCTAGCAGAGCACACAGATGGACTCT
TCAGGTTCGTTCCTACACATGGAGACTCAGGTTTCTAGAATACCGATTTA
GAACTTAAACTAAACCTTACCTACCCTGATGGCTGTGGTAGGCACAAGTC
TTTTATCCCAGCACTCTTTTAGTAAATGCTGGTGTTGATTCTTTTGAACC
GCATCTTTCTCTTGGTATATTTTGGTGACCTTTGTTTCTTTTTTTTCCTT
CTGGTTTATATTCTTTTTTTCAACTACTTCTCCAATATTACTTCACTTAT
TCTCTTTTCTCTACTATTCTTCATTTTTC
AGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCAGGAATTCTCTGTGATGTTAATAGCTAAAAGTTGACCAAAT
TATAATAACCCACCATGGTGGCAAGCAAAGTGAGTCACTAGGCCAAAGGG
TTACTTAGTCACTATACAAACCAACCAATGCCTGAAAGGGTTACTTGCTA
CACTAATGAAAACCCTGTTGCTCAAATCTGTCCCTTACAAAGGTATAAAA
AGTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGCTTGCTGAGA
GGGGAGTCCCCAACATGTTGTATCAATAAAAATCCTCATGTGTTTTGCAT
CGATGGCAGTCTCTGTGGTCTTTGTGAGTAAGGTTCTTTTGACAAACTCC
CAACACCACATCCCACCCAGAGGCTTCTAGATTGTATTTCTCCTTTTTCT
TTTTGGTGATGGCCTTGTCAGCGTTGACGAGCACTGGTCATATGTGCTTA
TTCTGTATCATAATTAGGATCGGCCCTCTTAATTTTCTGAATTTACTTGT
TTCTTTTTACGCTCCCGTTTTTTGCCCAATATCTTCCTTTATAATTTCCT
TTGATTTCCTCCTTTTCTTTTATCTACTATTCTCCTATAATAAACTCCTA
CCACCCTTATTATTCTCTTTTTTTATCTCACGTTCTTTTCCGCCTCCGTT
CTCAATTTTTTTCCTTATCTCTTCTTATCATCCTTTTTTCTCTCCTCTTC
ACCACTTTTATAATTCTTTCTATTTTCTTCCTTCACAATCTTACNTTTAT
TTATTACATCCTCTTCTTTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_j09.b1 MSMg01no438_j09.b1 CHROMAT_FILE:
MSMg01no438_j09.b1 PHD_FILE: MSMg01no438_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:25 2005
         (444 letters)



>mm_chr19_32252297_32253141
          Length = 845

 Score =  835 bits (432), Expect = 0.0
 Identities = 438/440 (99%), Gaps = 1/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctagctttttac-caggatttatatgtcacaactagatgccatgctagtctttga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctagctttttacacaggatttatatgtcacaactagatgccatgctagtctttga 265

                                                                       
Query: 65  aaaaagtgagagctggaacacagagggaaagcagaaagagggaaaacagaacaagagttg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 aaaaagtgagagctggaacacagagggaaagcagaaagagggaaaacagaacaagaattg 325

                                                                       
Query: 125 cctaaggattcaagtccagggtgatatgtccctttaaatgtgagtggccacctggaacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctaaggattcaagtccagggtgatatgtccctttaaatgtgagtggccacctggaacag 385

                                                                       
Query: 185 tgtcaggctgccatgggcttaccatagcccatcttcttggaaatctctgttgctgggaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtcaggctgccatgggcttaccatagcccatcttcttggaaatctctgttgctgggaca 445

                                                                       
Query: 245 ctggataaaccctgttaataccagtagtcttggcagggcatcaaggaagatggtgaacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctggataaaccctgttaataccagtagtcttggcagggcatcaaggaagatggtgaacag 505

                                                                       
Query: 305 ctgcctcccttaagaccacagcagacattttcgctaccagtccagggggcaagctccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctgcctcccttaagaccacagcagacattttcgctaccagtccagggggcaagctccttc 565

                                                                       
Query: 365 cctctggagccctgagactttcctaagtgccaacactccagtgctcttcagaaagactcg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cctctggagccctgagactttcctaagtgccaacactccagtgctcttcagaaagactcg 625

                               
Query: 425 gcaagtcaccaagatctagc 444
           ||||||||||||||||||||
Sbjct: 626 gcaagtcaccaagatctagc 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space:   362390
Effective search space used:   362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)