BAC Information

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BAC

Clone NameMSMg01-441B03
Chromosome19 (Build37)
Map Location 58,093,883 - 58,263,589
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneAblim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441B03.T7 (MSMg01no441_b03.b1)MSMg01-441B03.TJ (MSMg01no441_b03.g1)
ACCAG531038AG531039
length751698
length of high quality
(start - end)
515 (53 - 567)157 (86 - 242)
definitionCHROMAT_FILE: MSMg01no441_b03.b1 PHD_FILE: MSMg01no441_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:43 2005CHROMAT_FILE: MSMg01no441_b03.g1 PHD_FILE: MSMg01no441_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,093,883 - 58,094,393)(58,263,433 - 58,263,589)
sequence
NGGGGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTCCTTGACTTATGAATACGTAGAGACAGCTATAACC
AGGATAAATTCTTTTTGCTCCTTACATCCTTGGCAACCTCTGAGGTATGA
TTTGAGCCATCTCTTCATTAGGAATTCAACAAGACCAACTTTCTCATTAC
GTGGGGCAGCACACTGAGTAATAGGAAATCTGGCTTGGCTACAGTATCGT
GCACAACGGCCATGGTCAATAAACATTTATTGAATGACTGTCTTGTTACC
AAGACTCTGCAGCATAGTGGCTTCAGTCCGACCATCTGCTTGAGTGGGAT
GCCTGTGACAATAATGGTTCATACTGGGTGCATGTTCTCCAGTGCCCAAA
ATTCAAGAGAGATCAACACACACCCTCCATCAGAATATGCAGCCGTGTCT
GCAAGGCAACTGCATGTCAAATTGAGGTGCAGAGAGGTAGCTATTTTTGC
CTGACACCAGGGACACTCAGGAATGTATGGACGATGCTGTCACAACTGGA
CTTTTCCCCTGGAGAAGCCTTAGTCGAAACTGATATCCTTCTATAGCAAG
TTGTGACAAGATGGCTACTCCATAGTCCATCTCTTGTCACCTAATTTCTG
CCCATCAGTTCTCACTGCCGAGTGACTTTTCCCTAGCTCACATGAGAAAG
TACAGGGAGGAAGTCCGAAAACCTAGTTCAAGAGCTGGTTCTGCTCCACC
C
TTATTGTACCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAGCGAACCAA
CAGGACAGCCCAGCAAGTTGAAACTGGACCAGGTTTAATTTGGAAAGTCC
AGAGATGGGAATATTTCTACGAAGAAAGAAAAGCTAGTGTGCAAATGACC
TCATTTTTAAAACATATAAGGGATGTGCTGTACTTGCCTAAANNAAAAGA
AATTTACNNAGGTGGGNCTATGGGTCATGGGAAGNNNAAAGAATACTCTT
TGGTGGTCCCCAAGCCATGGGAGAGAACTTNNTTTGTTGTCCCAAGCCCC
AGGGGGGGAANNANNNNNNNNNNNNNATTATATAAATATCNCCCCCNNNN
NNATACCTTTTCCCACTATTTTGTTTTCATCATTTCCATATCTACCCGAC
CCCATTTACCTCGTTACACCTCCTTTCTANCTCACGCCCTCCTCCTCCCT
TTTCTCTCCGTGCCCGCTTTAAACCATTCACTTCCGCCCATTTTTTTTTC
TTCATTTTTCCCCCCCCCGCCCCGATTTTCCCCACGCCGTTGTTACTTAT
GTGGTGNATGAGCCCCTCTCTTTTCCTTTTTTTCCCCCCCGCTCTACCTC
CCACGTTGTTTTACATACCTTTCTTCGCCTACCTACCCCGCCCCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_b03.b1 MSMg01no441_b03.b1 CHROMAT_FILE:
MSMg01no441_b03.b1 PHD_FILE: MSMg01no441_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:43 2005
         (515 letters)



>mm_chr19_58093679_58094593
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 506/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattccttgacttatgaatacgtagagacagctataaccaggataaattcttttt 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattccctgaattatgaatacgtagagacagctataaccaggataaattcttttt 264

                                                                       
Query: 65  gctccttacatccttggcaacctctgaggtatgatttgagccatctcttcattaggaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctccttacatccttggcaacctctgaggtatgatttgagccatctcttcattaggaatt 324

                                                                       
Query: 125 caacaagaccaactttctcattacgtggggcagcacactgagtaataggaaatctggctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacaagaccaactttctcattacgtggggcagcacactgagtaataggaaatctggctt 384

                                                                       
Query: 185 ggctacagtatcgtgcacaacggccatggtcaataaacatttattgaatgactgtcttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggctacagtatcgtgcacaacggccatggtcaataaacatttattgaatgactgtcttgt 444

                                                                       
Query: 245 taccaagactctgcagcatagtggcttcagtccgaccatctgcttgagtgggatgcctgt 304
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 taccaagactctgcagcatagcggcttcagtccgaccatctgcttgattgggatgcctgt 504

                                                                       
Query: 305 gacaataatggttcatactgggtgcatgttctccagtgcccaaaattcaagagagatcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaataatggttcatactgggtgcatgttctccagtgcccaaaattcaagagagatcaa 564

                                                                       
Query: 365 cacacaccctccatcagaatatgcagccgtgtctgcaaggcaactgcatgtcaaattgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacacaccctccatcagaatatgcagccgtgtctgcaaggcaactgcatgtcaaattgag 624

                                                                       
Query: 425 gtgcagagaggtagctatttttgcctgacaccagggacactcaggaatgtatggacgatg 484
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgcggagaggtagctatttttgcctgacaccagggacactcaggaatgtatggacgatg 684

                                          
Query: 485 ctgtcacaactggacttttcccctggagaag 515
           |||||||||||||||||||||||||||||||
Sbjct: 685 ctgtcacaactggacttttcccctggagaag 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_b03.g1 MSMg01no441_b03.g1 CHROMAT_FILE:
MSMg01no441_b03.g1 PHD_FILE: MSMg01no441_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:43 2005
         (157 letters)



>mm_chr19_58263233_58263789
          Length = 557

 Score =  304 bits (157), Expect = 2e-87
 Identities = 157/157 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagagcgaaccaacaggacagcccagcaagttgaaactggaccaggtttaatttggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cacagagcgaaccaacaggacagcccagcaagttgaaactggaccaggtttaatttggaa 298

                                                                       
Query: 61  agtccagagatgggaatatttctacgaagaaagaaaagctagtgtgcaaatgacctcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agtccagagatgggaatatttctacgaagaaagaaaagctagtgtgcaaatgacctcatt 238

                                                
Query: 121 tttaaaacatataagggatgtgctgtacttgcctaaa 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tttaaaacatataagggatgtgctgtacttgcctaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)