BAC Information

Click to search

BAC

Clone NameMSMg01-441O07
Chromosome19 (Build37)
Map Location 44,272,008 - 44,272,441
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1
Downstream geneScd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441O07.T7 (MSMg01no441_o07.b1)MSMg01-441O07.TJ (MSMg01no441_o07.g1)
ACCAG531669AG531670
length743734
length of high quality
(start - end)
433 (78 - 510)269 (331 - 599)
definitionCHROMAT_FILE: MSMg01no441_o07.b1 PHD_FILE: MSMg01no441_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:51 2005CHROMAT_FILE: MSMg01no441_o07.g1 PHD_FILE: MSMg01no441_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCAACTTTCCAAATTTATCTGATATTTGCAAACAGCTA
ACGTGTAGCCAGCCATGCGCAGACTCTAGACCTCCCAGCCCAGAGCACAC
AAGAAGAAATTTTAAAATGCTGCTCTGTTACCTCACCGTAAGCCTGTTCC
CTAGTCCTGTCTGATTCTCGGAGTTGCTGTACTGAGATGGCCCCTCTCCC
ACTTCCCCATTTAATACACTATGGTTGTATTCTGTGCCATTGCATGCTGG
CATGTACAGTTTGCTTGGGGTTTTTGTCCACTTTGTCTTAGAAATGTGTG
TGCTCAGGCTGGGTGTGGTGCCACGTGCCTGCAATATCAGCACTTAAGAA
GTGGAAACAGGAGAATTGGGAGTTCAAGACCAGCCTCGGGTAAATAGAGA
GTTCAAATCCAGTCTGGGATACATGAGACCCTGTCCACAAAAAAAAAAAA
AAAAAAAAAAGCCAGACATGGTATACTCATGGCAATCCCATTATGAGGCA
GAGGTAGGCAGATCTCTGAATTCTAGGACAGTCTGGTTCACCAAGTGATT
TCCCGAACTCCCCGAACTTTCTGGCTCCTATTACATAGAAATCAAAGAAG
TCTTTTTTTCCCCGCGAGCCCCCCAGGGTTTGATACCGACCCCCGAATTA
TTTTGCCTTTTTTATAGCACACATCTTTGGCCCCTTCGCCTAT
AAAAANACGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAATCTAGNTGAAGGGAC
AGGGCTCAGGGACACCAACAGAGAGTCAGTGACCAGGAAGGTGAGGGCTG
GGGTGTTAGAGAGCCCCAACATAGCTGAGACTCTGAATGCACAAAATGCA
TTGAAGGCTCTGAGTTCCCTGAAGATTTGCTTGAGAGAAGACAAAGGCAG
AGAGATTTAAAAGGGAGGGCACCAGGGAACTCACAGAGTATTGTTTTAGT
AATTGTAGGAACCTTCAGAATTCAGTCNTCTCAGGCCAAGGAGATGGCAG
ATAGAGAGAGCTTTGCCACAACAGCACAAACGACAGAGTTCAGATCCCCA
CAACTCACATAAAGTCAGATGTGACAGCACACGTATGTAATCCCAGCGCA
TCTGTCATGAGGGGAGGCTGACAGGAGAATCCTGGAAAGCTCAGGGGCCA
GGTAGCCTGGTGGTCACAGGGATGCACAGCGAGAGATACGGCCTTAAAAG
CACGTTGGGAAGCAAGGAGCAACACCCAAGGCTGTCCTCTGACTCCCACA
TGTGTATCCACGCTAACTGAACACACACACATCTGGACATGTATGTACAT
GTATAATTAGGTTTTTACTGATAGATATCGTCTCAGAAGTAGCTTTTGCC
GACTCTTAACCTCTTGTGCCCGCGCTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_o07.b1 MSMg01no441_o07.b1 CHROMAT_FILE:
MSMg01no441_o07.b1 PHD_FILE: MSMg01no441_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:51 2005
         (433 letters)



>mm_chr19_44271808_44272640
          Length = 833

 Score =  801 bits (414), Expect = 0.0
 Identities = 429/434 (98%), Gaps = 1/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatctgatatttgcaaacagctaacgtgtagccagccatgcgcagactctagacctccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctgatatttgcaaacagctaacgtgtagccagccatgcgcagactctagacctccca 260

                                                                       
Query: 61  gcccagagcacacaagaagaaattttaaaatgctgctctgttacctcaccgtaagcctgt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gcccagagcacacaagaagaaatttttaaatgctgctctgttacctcaccgtaagcctgt 320

                                                                       
Query: 121 tccctagtcctgtctgattctcggagttgctgtactgagatggcccctctcccacttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctagtcctgtctgattctcggagttgctgtactgagatggcccctctcccacttccc 380

                                                                       
Query: 181 catttaatacactatggttgtattctgtgccattgcatgctggcatgtacagtttgcttg 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttaatacactatggttgtgttctgtgccattgcatgctggcatgtacagtttgcttg 440

                                                                       
Query: 241 gggtttttgtccactttgtcttagaaatgtgtgtgctcaggctgggtgtggtgccacgtg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggttttgtccactttgtcttagaaatgtgtgtgctcaggctgggtgtggtgccacgtg 500

                                                                       
Query: 301 cctgcaatatcagcacttaagaagtggaaacaggagaattgggagttcaagaccagcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgcaatatcagcacttaagaagtggaaacaggagaattgggagttcaagaccagcctc 560

                                                                       
Query: 361 gggtaaatagagagttcaaatccagtctgggatacatgagaccctgtccac-aaaaaaaa 419
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 gggtacatagagagttcaaatccagtctgggatacatgagaccctgtccaccaaaaaaaa 620

                         
Query: 420 aaaaaaaaaaaaaa 433
           ||||||||||||||
Sbjct: 621 aaaaaaaaaaaaaa 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)